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[ aramo ]
[ Källkod: stringtie ]
Paket: stringtie (2.2.1+ds-2)
Länkar för stringtie
Trisquelresurser:
Hämta källkodspaketet stringtie:
- [stringtie_2.2.1+ds-2.dsc]
- [stringtie_2.2.1+ds.orig-debian-tests-data.tar.xz]
- [stringtie_2.2.1+ds.orig.tar.xz]
- [stringtie_2.2.1+ds-2.debian.tar.xz]
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Steffen Moeller
- Nilesh Patra
Externa resurser:
- Hemsida [ccb.jhu.edu]
Liknande paket:
assemble short RNAseq reads to transcripts
The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.
StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.
Andra paket besläktade med stringtie
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.4)
- GCC support library
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- dep: libhts3 (>= 1.13)
- C library for high-throughput sequencing data formats
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
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- rec: stringtie-examples
- Paketet inte tillgängligt
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- sug: cufflinks
- Paketet inte tillgängligt
Hämta stringtie
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 285,5 kbyte | 629 kbyte | [filförteckning] |