Paket: centrifuge (1.0.3-10)
Länkar för centrifuge
Trisquelresurser:
Hämta källkodspaketet centrifuge:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Andreas Tille
Externa resurser:
- Hemsida [ccb.jhu.edu]
Liknande paket:
rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.
Andra paket besläktade med centrifuge
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- dep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
-
- dep: jellyfish
- count k-mers in DNA sequences
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [arm64, ppc64el]
- GCC support library
- dep: libgcc-s1 (>= 3.3.1) [amd64]
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
Hämta centrifuge
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 451,8 kbyte | 1235 kbyte | [filförteckning] |
| arm64 | 584,2 kbyte | 1457 kbyte | [filförteckning] |
| armhf | 548,6 kbyte | 1169 kbyte | [filförteckning] |
| ppc64el | 716,0 kbyte | 1917 kbyte | [filförteckning] |