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Paket: r-bioc-monocle (2.22.0-1)

clustering, differential expression, and trajectory analysis for RNA-Seq

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

Andra paket besläktade med r-bioc-monocle

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  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
    dep: libc6 (>= 2.17) [arm64, ppc64el]
    dep: libc6 (>= 2.4) [armhf]
  • dep: libgcc-s1 (>= 3.0) [ej armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: r-api-4.0
    virtuellt paket som tillhandahålls av r-base-core
  • dep: r-api-bioc-3.14
    virtuellt paket som tillhandahålls av r-bioc-biocgenerics
  • dep: r-base-core (>= 4.1.2-1ubuntu1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biobase
    base functions for Bioconductor
  • dep: r-bioc-biocgenerics
    generic functions for Bioconductor
  • dep: r-bioc-biocviews
    Categorized views of R package repositories
  • dep: r-bioc-hsmmsinglecell (>= 0.101.5)
    Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts
  • dep: r-bioc-limma
    linear models for microarray data
  • dep: r-cran-cluster
    GNU R package for cluster analysis by Rousseeuw et al
  • dep: r-cran-combinat
    GNU R package with utilities for combinatorics
  • dep: r-cran-ddrtree (>= 0.1.4)
    GNU R learning principal graphs with DDRTree
  • dep: r-cran-densityclust (>= 0.3)
    GNU R clustering by fast search and find of density peaks
  • dep: r-cran-dplyr
    GNU R grammar of data manipulation
  • dep: r-cran-fastica
    GNU R package for ICA and Projection Pursuit
  • dep: r-cran-ggplot2 (>= 1.0.0)
    implementation of the Grammar of Graphics
  • dep: r-cran-igraph (>= 1.0.1)
    GNU R network analysis and visualization
  • dep: r-cran-irlba (>= 2.0.0)
    GNU R fast truncated SVD, PCA and symmetric eigendecomposition
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: r-cran-matrix (>= 1.2-6)
    GNU R package of classes for dense and sparse matrices
  • dep: r-cran-matrixstats
    GNU R methods that apply to rows and columns of a matrix
  • dep: r-cran-pheatmap
    GNU R package to create pretty heatmaps
  • dep: r-cran-plyr
    tools for splitting, applying and combining data
  • dep: r-cran-proxy
    GNU R distance and similarity measures
  • dep: r-cran-qlcmatrix
    GNU R utility sparse matrix functions for quantitative language
  • dep: r-cran-rann (>= 2.5)
    Fast Nearest Neighbour Search Using L2 Metric
  • dep: r-cran-rcpp (>= 0.12.0)
    GNU R package for Seamless R and C++ Integration
  • dep: r-cran-reshape2
    Flexibly reshape data: a reboot of the reshape package
  • dep: r-cran-rtsne
    GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
  • dep: r-cran-slam
    GNU R sparse lighweight arrays and matrices package
  • dep: r-cran-stringr
    Make it easier to work with strings
  • dep: r-cran-tibble
    GNU R Simple Data Frames
  • dep: r-cran-vgam (>= 1.0-6)
    GNU R package for estimating vector generalized additive models
  • dep: r-cran-viridis
    GNU R package for color maps from matplotlib
  • sug: r-bioc-scater
    Single-Cell Analysis Toolkit for Gene Expression Data in R
  • sug: r-cran-hmisc
    GNU R miscellaneous functions by Frank Harrell
  • sug: r-cran-knitr
    GNU R package for dynamic report generation using Literate Programming
  • sug: r-cran-seurat
    Tools for Single Cell Genomics

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 1.441,7 kbyte1754 kbyte [filförteckning]
arm64 1.439,2 kbyte1741 kbyte [filförteckning]
armhf 1.437,8 kbyte1717 kbyte [filförteckning]
ppc64el 1.442,2 kbyte1793 kbyte [filförteckning]