Paket: prime-phylo (1.0.11-10)
Länkar för prime-phylo
Trisquelresurser:
Hämta källkodspaketet prime-phylo:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Erik Sjolund
- Andreas Tille
Externa resurser:
- Hemsida [prime.sbc.su.se]
Liknande paket:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Andra paket besläktade med prime-phylo
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- eller libblas.so.3
- virtuellt paket som tillhandahålls av libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libboost-mpi1.74.0 (>= 1.74.0)
- C++ interface to the Message Passing Interface (MPI)
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- dep: libboost-serialization1.74.0 (>= 1.74.0)
- serialization library for C++
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armhf]
- dep: libgcc-s1 (>= 4.5) [arm64]
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- eller liblapack.so.3
- virtuellt paket som tillhandahålls av libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libopenmpi3 (>= 4.1.0)
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: libxml2 (>= 2.7.4)
- GNOME XML library
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mrbayes
- Bayesian Inference of Phylogeny
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- sug: muscle
- Multiple alignment program of protein sequences
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- sug: njplot
- phylogenetic tree drawing program
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
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- sug: python3-biopython
- Python3 library for bioinformatics
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- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- sug: treeviewx
- Displays and prints phylogenetic trees
Hämta prime-phylo
Arkitektur | Paketstorlek | Installerad storlek | Filer |
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amd64 | 794,6 kbyte | 2660 kbyte | [filförteckning] |
arm64 | 752,5 kbyte | 2471 kbyte | [filförteckning] |
armhf | 780,4 kbyte | 1976 kbyte | [filförteckning] |
ppc64el | 885,1 kbyte | 3443 kbyte | [filförteckning] |