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[ Källkod: presto  ]

Paket: python3-presto (0.7.2-1)

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python3-presto

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Original Maintainers:

  • Debian Med Packaging Team (E-postarkiv)
  • Steffen Moeller

Externa resurser:

Liknande paket:

toolkit for processing B and T cell sequences (Python3 module)

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

This package provides the presto Python3 module.

Andra paket besläktade med python3-presto

  • beror
  • rekommenderar
  • föreslår
  • dep: cd-hit
    suite of programs designed to quickly group sequences
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-biopython
    Python3 library for bioinformatics
  • dep: python3-numpy
    Fast array facility to the Python language (Python 3)
  • dep: python3-packaging
    core utilities for python3 packages
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-scipy
    scientific tools for Python 3
  • dep: vsearch [ej armhf, riscv64]
    tool for processing metagenomic sequences

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 78,8 kbyte513 kbyte [filförteckning]
arm64 78,8 kbyte513 kbyte [filförteckning]
armhf 78,8 kbyte513 kbyte [filförteckning]
ppc64el 78,8 kbyte513 kbyte [filförteckning]
riscv64 45,3 kbyte219 kbyte [filförteckning]