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[ Källkod: predictprotein  ]

Paket: predictprotein (1.1.07-3)

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predictprotein

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Original Maintainers:

  • Debian Med Packaging Team (E-postarkiv)
  • Guy Yachdav
  • Laszlo Kajan
  • Andreas Tille

Externa resurser:

Liknande paket:

suite of protein sequence analysis tools

PredictProtein is a sequence analysis suite providing prediction of protein structure and function.

PredictProtein takes a protein sequence as input and provides the following per-residue, or whole protein annotations: 

 * secondary structure
 * solvent accessibility
 * multiple sequence alignments
 * PROSITE sequence motifs
 * low-complexity regions
 * nuclear localisation signals
 * regions lacking regular structure (NORS)
 * unstructured loops
 * transmembrane helices
 * transmembrane beta barrels
 * coiled-coil regions
 * disulfide-bonds
 * disordered regions
 * B-value flexibility
 * protein-protein interaction sites
 * Gene Ontology terms

Andra paket besläktade med predictprotein

  • beror
  • rekommenderar
  • föreslår
  • dep: bioperl
    Perl tools for computational molecular biology
  • dep: blast2
    transitional dummy package to ncbi-blast+-legacy
  • dep: disulfinder
    cysteines disulfide bonding state and connectivity predictor
  • dep: hmmer
    profile hidden Markov models for protein sequence analysis
  • dep: hmmer2
    profile hidden Markov models for protein sequence analysis
  • dep: librg-exception-perl
    RG::Exception Perl module
  • dep: librg-utils-perl
    parsers and format conversion utilities used by (e.g.) profphd
  • dep: make
    utility for directing compilation
    också ett virtuellt paket som tillhandahålls av make-guile
  • dep: metastudent
    predictor of Gene Ontology terms from protein sequence
  • dep: ncbi-seg
    tool to mask segments of low compositional complexity in amino acid sequences
  • dep: ncoils
    coiled coil secondary structure prediction
  • dep: norsnet
    tool to identify unstructured loops in proteins
  • dep: norsp
    predictor of non-regular secondary structure
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: predictnls
    prediction and analysis of protein nuclear localization signals
  • dep: profbval
    predictor of flexible/rigid protein residues from sequence
  • dep: profisis
    prediction of protein-protein interaction sites from sequence
  • dep: profphd
    secondary structure and solvent accessibility predictor
  • dep: proftmb
    per-residue prediction of bacterial transmembrane beta barrels
  • dep: reprof
    protein secondary structure and accessibility predictor
  • sug: pp-cache-mgr (>= 1.0.3)
    Paketet inte tillgängligt
  • sug: predictprotein-nonfree
    Paketet inte tillgängligt

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