Paket: libfreecontact0v5 (1.0.21-6build2)
Länkar för libfreecontact0v5
Trisquelresurser:
Hämta källkodspaketet freecontact:
- [freecontact_1.0.21-6build2.dsc]
- [freecontact_1.0.21.orig.tar.xz]
- [freecontact_1.0.21-6build2.debian.tar.xz]
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Laszlo Kajan
- Andreas Tille
Externa resurser:
- Hemsida [rostlab.org]
Liknande paket:
fast protein contact predictor library
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the shared library implementing freecontact.
Andra paket besläktade med libfreecontact0v5
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- eller libblas.so.3
- virtuellt paket som tillhandahålls av libatlas3-base, libblas3, libopenblas-base
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- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libgfortran4 (>= 7)
- Runtime library for GNU Fortran applications
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- eller liblapack.so.3
- virtuellt paket som tillhandahålls av libatlas3-base, liblapack3, libopenblas-base
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
Hämta libfreecontact0v5
Arkitektur | Paketstorlek | Installerad storlek | Filer |
---|---|---|---|
amd64 | 69,3 kbyte | 178 kbyte | [filförteckning] |
i386 | 58,6 kbyte | 161 kbyte | [filförteckning] |