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[ Källkod: libfreecontact-perl  ]

Paket: libfreecontact-perl (0.08-6)

fast protein contact predictor - binding for Perl

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Perl binding.

Andra paket besläktade med libfreecontact-perl

  • beror
  • rekommenderar
  • föreslår
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libfreecontact0v5
    fast protein contact predictor library
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: perl (>= 5.26.1-2ubuntu1)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.26.1
    virtuellt paket som tillhandahålls av perl-base

Hämta libfreecontact-perl

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 71,3 kbyte130 kbyte [filförteckning]
i386 72,6 kbyte137 kbyte [filförteckning]