Källkodspaket i "etiona", Undersektion science
- 3depict (0.0.19-1build1)
- visualisation and analysis for single valued point data
- abacas (1.3.1-4)
- Algorithm Based Automatic Contiguation of Assembled Sequences
- abinit (8.0.8-4)
- package for electronic structure calculations
- abinit-doc (8.0.8-4)
- package for electronic structure calculations (Documentation)
- acedb-other (4.9.39+dfsg.02-3)
- retrieval of DNA or protein sequences
- acedb-other-belvu (4.9.39+dfsg.02-3)
- transitional package for belvu
- acedb-other-belvu
- virtuellt paket som tillhandahålls av belvu
- acedb-other-dotter (4.9.39+dfsg.02-3)
- transitional package for dotter
- acedb-other-dotter
- virtuellt paket som tillhandahålls av dotter
- aces3 (3.0.8-5.1build2)
- Advanced Concepts in Electronic Structure III
- aces3-data (3.0.8-5.1build2)
- Advanced Concepts in Electronic Structure III
- achilles (2-9)
- Artificial life and evolution simulator
- adapterremoval (2.2.2-1)
- rapid adapter trimming, identification, and read merging of gene sequences
- adapterremoval-examples (2.2.2-1)
- rapid adapter trimming, identification, and read merging (example data)
- adun-core (0.81-11build1)
- Molecular Simulator
- adun.app (0.81-11build1)
- Molecular Simulator for GNUstep (GUI)
- aegean (0.15.2+dfsg-1)
- integrated genome analysis toolkit
- aeskulap (0.2.2b1+git20161206-4)
- medical image viewer and DICOM network client
- aevol (5.0-1)
- digital genetics model to run Evolution Experiments in silico
- aghermann (1.1.2-1build1)
- Sleep-research experiment manager
- aladin (10.076+dfsg-1)
- Interactive sky atlas for astronomical images and datasets
- alfa (1.0-2build2)
- Automated Line Fitting Algorithm
- algotutor (0.8.6-2)
- program for observing the intermediate steps of algorithm
- alien-hunter (1.7-6)
- Interpolated Variable Order Motifs to identify horizontally acquired DNA
- altree (1.3.1-5)
- program to perform phylogeny-based association and localization analysis
- altree-examples (1.3.1-5)
- example files for ALTree
- amap-align (2.2-6)
- Protein multiple alignment by sequence annealing
- ampliconnoise (1.29-7)
- removal of noise from 454 sequenced PCR amplicons
- andi (0.12-3)
- Efficient Estimation of Evolutionary Distances
- anfo (0.98-6)
- Short Read Aligner/Mapper from MPG
- ants (2.2.0-1ubuntu1)
- advanced normalization tools for brain and image analysis
- aoflagger (2.10.0-2)
- Find RFI in radio astronomical observations
- apbs (1.4-1build1)
- Adaptive Poisson Boltzmann Solver
- apertium-af-nl (0.2.0~r58256-1)
- Apertium translation data for the Afrikaans-Dutch pair
- apertium-all-dev (3.4.2~r68466-4)
- Metapackage for all tools required for Apertium development
- apertium-apy (0.9.1~r343-4)
- Apertium APY service
- apertium-arg (0.1.2~r65494-1)
- Apertium single language data for Aragonese
- apertium-arg-cat (0.1.0~r64925-1)
- Apertium translation data for the Aragonese-Catalan pair
- apertium-bel (0.1.0~r81357-1)
- Apertium single language data for Belarusian
- apertium-bel-rus (0.2.0~r81186-1)
- Apertium translation data for the Belarusian-Russian pair
- apertium-br-fr (0.5.0~r61325-2)
- Apertium linguistic data to translate between Breton and French
- apertium-ca-it (0.1.1~r57554-1)
- Apertium translation data for the Catalan-Italian pair
- apertium-cat (2.3.1~r82994-1)
- Apertium single language data for Catalan
- apertium-cat-srd (1.0.0~r82995-1)
- Apertium translation data for the Catalan-Sardinian pair
- apertium-crh (0.2.0~r83161-1)
- Apertium single language data for Crimean Tatar
- apertium-crh-tur (0.3.0~r83159-1)
- Apertium translation data for the Crimean Tatar-Turkish pair
- apertium-cy-en (0.1.1~r57554-3)
- Apertium translation data for the Welsh-English pair
- apertium-dan (0.5.0~r67099-1)
- Apertium single language data for Danish
- apertium-dan-nor (1.3.0~r67099-1)
- Apertium translation data for the Danish-Norwegian pair
- apertium-dev (3.4.2~r68466-4)
- Development tools and library for Apertium
- apertium-en-gl (0.5.2~r57551-1)
- Apertium translation data for the English-Galician pair
- apertium-eo-en (1.0.0~r63833-1)
- Apertium linguistic data to translate between Esperanto and English
- apertium-eo-fr (0.9.0~r57551-1)
- Apertium translation data for the Esperanto-French pair
- apertium-es-ast (1.1.0~r51165-1)
- Apertium translation data for the Spanish-Asturian pair
- apertium-es-it (0.2.0~r78826-1)
- Transitional dummy package for apertium-spa-ita
- apertium-eu-en (0.3.1~r56205-1)
- Apertium translation data for the Basque-English pair
- apertium-fra (1.1.0~r78695-1)
- Apertium single language data for French
- apertium-fra-cat (1.2.0~r78602-2)
- Apertium translation data for the French-Catalan pair
- apertium-hbs (0.5.0~r68212-2)
- Apertium single language data for Serbo-Croatian
- apertium-hbs-eng (0.1.0~r57598-1)
- Apertium translation data for the Serbo-Croatian - English pair
- apertium-hbs-mkd (0.1.0~r76450-1)
- Apertium translation data for the Serbo-Croatian-Macedonian pair
- apertium-hbs-slv (0.1.0~r59294-1)
- Apertium translation data for the Serbo-Croatian-Slovenian pair
- apertium-hin (0.1.0~r59158-1)
- Apertium single language data for Hindi
- apertium-id-ms (0.1.1~r57551-1)
- Apertium translation data for the Indonesian-Malay pair
- apertium-is-sv (0.1.0~r76450-1)
- Apertium translation data for the Icelandic-Swedish pair
- apertium-isl (0.1.0~r65494-1)
- Apertium single language data for Icelandic
- apertium-isl-eng (0.1.0~r66083-1)
- Apertium translation data for the Icelandic-English pair
- apertium-ita (0.10.0~r82237-1)
- Apertium single language data for Italian
- apertium-kaz (0.1.0~r61338-1)
- Apertium single language data for Kazakh
- apertium-kaz-tat (0.2.1~r57554-1)
- Apertium translation data for the Kazakh-Tatar pair
- apertium-lex-tools (0.1.1~r66150-1)
- Constraint-based lexical selection module
- apertium-mk-bg (0.2.0~r49489-1)
- Apertium translation data for the Macedonian-Bulgarian pair
- apertium-mk-en (0.1.1~r57554-1)
- Apertium translation data for the Macedonian-English pair
- apertium-mlt-ara (0.2.0~r62623-1)
- Apertium translation data for the Maltese-Arabic pair
- apertium-nno (0.9.0~r69513-2)
- Apertium single language data for Norwegian Nynorsk
- apertium-nno-nob (1.1.0~r66076-1)
- Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
- apertium-nob (0.9.0~r69513-1)
- Apertium single language data for Norwegian Bokmål
- apertium-rus (0.2.0~r82706-1)
- Apertium single language data for Russian
- apertium-sme-nob (0.6.0~r61921-1)
- Apertium translation data for the Northern Sami-Norwegian Bokmål pair
- apertium-spa (1.1.0~r79716-1)
- Apertium single language data for Spanish
- apertium-spa-arg (0.4.0~r64399-1)
- Apertium translation data for the Spanish-Aragonese pair
- apertium-spa-cat (2.1.0~r79717-1)
- Apertium translation data for the Spanish-Catalan pair
- apertium-spa-ita (0.2.0~r78826-1)
- Apertium translation data for the Spanish-Italian pair
- apertium-srd (1.2.0~r82994-1)
- Apertium single language data for Sardinian
- apertium-srd-ita (0.9.5~r82237-1)
- Apertium translation data for the Sardinian-Italian pair
- apertium-swe (0.7.0~r69513-1)
- Apertium single language data for Swedish
- apertium-swe-dan (0.7.0~r66063-1)
- Apertium translation data for the Swedish-Danish pair
- apertium-swe-nor (0.2.0~r69544-1)
- Apertium translation data for the Swedish-Norwegian pair
- apertium-tat (0.1.0~r60887-1)
- Apertium single language data for Tatar
- apertium-tur (0.2.0~r83161-1)
- Apertium single language data for Turkish
- apertium-ukr (0.1.0~r82563-1)
- Apertium single language data for Ukrainian
- apertium-urd (0.1.0~r61311-1)
- Apertium single language data for Urdu
- apertium-urd-hin (0.1.0~r64379-1)
- Apertium translation data for the Urdu-Hindi pair
- aragorn (1.2.38-1)
- tRNA and tmRNA detection in nucleotide sequences
- arden (1.0-3)
- specificity control for read alignments using an artificial reference
- ariba (2.11.1+ds-3)
- Antibiotic Resistance Identification By Assembly
- art-nextgen-simulation-tools (20160605+dfsg-2build1)
- simulation tools to generate synthetic next-generation sequencing reads
- art-nextgen-simulation-tools-profiles (20160605+dfsg-2build1)
- profiles for art simulation tools
- artemis (16.0.17+dfsg-3)
- genome browser and annotation tool
- artfastqgenerator (0.0.20150519-2)
- outputs artificial FASTQ files derived from a reference genome
- artfastqgenerator-examples (0.0.20150519-2)
- ou7puts artificial FASTQ files derived from a reference genome (examples)
- asdftool (1.3.3-1)
- Command line tool to manipulate ASDF scientific data files
- ase (3.15.0-1)
- Atomic Simulation Environment
- ask (1.1.1-2)
- Adaptive Sampling Kit for big experimental spaces
- assemblytics (0~20170131+ds-2)
- detect and analyze structural variants from a genome assembly
- astro-tasks (1.1ubuntu2)
- Debian Astronomy Pure Blend (tasksel tasks)
- astromatic (1.1)
- Astronomical pipeline software collection
- astrometry-data-tycho2 (2-3)
- Astrometry.net Tycho-2 index files
- astrometry-data-tycho2-07 (2-3)
- Astrometry.net Tycho-2 index files (22'-30')
- astrometry-data-tycho2-07-bigendian (2-3)
- Astrometry.net Tycho-2 big endian index files (22'-30')
- astrometry-data-tycho2-07-littleendian (2-3)
- Astrometry.net Tycho-2 little endian index files (22'-30')
- astrometry-data-tycho2-08 (2-3)
- Astrometry.net Tycho-2 index files (30'-44')
- astrometry-data-tycho2-08-bigendian (2-3)
- Astrometry.net Tycho-2 big endian index files (30'-44')
- astrometry-data-tycho2-08-littleendian (2-3)
- Astrometry.net Tycho-2 little endian index files (30'-44')
- astrometry-data-tycho2-09 (2-3)
- Astrometry.net Tycho-2 index files (44'-60')
- astrometry-data-tycho2-09-bigendian (2-3)
- Astrometry.net Tycho-2 big endian index files (44'-60')
- astrometry-data-tycho2-09-littleendian (2-3)
- Astrometry.net Tycho-2 little endian index files (44'-60')
- astrometry-data-tycho2-10-19 (2-3)
- Astrometry.net Tycho-2 index files (60'-2000')
- astrometry-data-tycho2-10-19-bigendian (2-3)
- Astrometry.net Tycho-2 big endian index files (60'-2000')
- astrometry-data-tycho2-10-19-littleendian (2-3)
- Astrometry.net Tycho-2 little endian index files (60'-2000')
- astrometry.net (0.73+dfsg-1)
- Astrometry plate solver
- astronomical-almanac (5.6-5)
- astronomical almanac - calculate planet and star positions
- atac (0~20150903+r2013-3)
- genome assembly-to-assembly comparison
- augustus (3.3+dfsg-2build1)
- gene prediction in eukaryotic genomes
- augustus-data (3.3+dfsg-2build1)
- data files for AUGUSTUS
- autodock (4.2.6-5)
- analysis of ligand binding to protein structure
- autodock-getdata (4.2.6-5)
- instructions for getData to collect compounds
- autodock-test (4.2.6-5)
- test files for AutoDock
- autodock-vina (1.1.2-4)
- docking of small molecules to proteins
- autogrid (4.2.6-5)
- pre-calculate binding of ligands to their receptor
- autogrid-test (4.2.6-5)
- test files for AutoGrid
- avce00 (2.0.0-5)
- Conversion of ESRI Arcinfo Vector Coverage in E00 format
- avogadro (1.2.0-3)
- Molecular Graphics and Modelling System
- avogadro-data (1.2.0-3)
- Molecular Graphics and Modelling System (Data Files)
- aweather (0.8.1-1.1build1)
- Advanced Weather Monitoring Program
- axe-demultiplexer (0.3.2+dfsg1-1build1)
- Trie-based DNA sequencing read demultiplexer
- bagel (1.1.0-1)
- Computational Chemistry Package
- baitfisher (1.0+dfsg-2)
- software package for designing hybrid enrichment probes
- ballview (1.4.3~beta1-4)
- free molecular modeling and molecular graphics tool
- bamtools (2.4.1+dfsg-2)
- toolkit for manipulating BAM (genome alignment) files
- barrnap (0.8+dfsg-2)
- rapid ribosomal RNA prediction
- bart (0.4.02-2)
- tools for computational magnetic resonance imaging
- bart-view (0.1.00-1)
- viewer for multi-dimensional complex-valued data
- bauble (0.9.7-2.1build1)
- biodiversity collection manager software application
- bcftools (1.7-2)
- genomic variant calling and manipulation of VCF/BCF files
- beads (1.1.18+dfsg-1)
- 2-DE electrophoresis gel image spot detection
- beagle (4.1~180127+dfsg-1)
- Genotype calling, genotype phasing and imputation of ungenotyped markers
- beast2-mcmc (2.4.4+dfsg-1)
- Bayesian MCMC phylogenetic inference
- bedops (2.4.26+dfsg-1)
- high-performance genomic feature operations
- bedtools (2.26.0+dfsg-5)
- suite of utilities for comparing genomic features
- bedtools-test (2.26.0+dfsg-5)
- test data for the bedtools package
- belvu (4.44.1+dfsg-2build1)
- multiple sequence alignment viewer and phylogenetic tool
- berkeley-express (1.5.1-3build2)
- Streaming quantification for high-throughput sequencing
- bibus (1.5.2-5)
- bibliographic database
- bio-eagle (2.4-1)
- Haplotype phasing within a genotyped cohort or using a phased reference panel
- bio-eagle-examples (2.4-1)
- Examples for bio-eagle
- bio-rainbow (2.0.4-1build1)
- clustering and assembling short reads for bioinformatics
- biogenesis (0.8-2)
- artificial life program that simulates evolution of organisms
- bioperl (1.7.2-2)
- Perl tools for computational molecular biology
- bioperl-run (1.7.1-3)
- BioPerl wrappers: scripts
- biosig-tools (1.3.0-2.2build1)
- format conversion tools for biomedical data formats
- biosquid (1.9g+cvs20050121-10)
- utilities for biological sequence analysis
- bist (0.5.2-1.1build1)
- chemical drawing tool
- bitseq (0.7.5+dfsg-3ubuntu1)
- Bayesian Inference of Transcripts from Sequencing Data
- bkchem (0.13.0-6)
- Chemical structures editor
- blasr (5.3+0-1build1)
- mapping single-molecule sequencing reads
- blast2 (1:2.6.0-1)
- transitional dummy package to ncbi-blast+-legacy
- blinken (4:17.12.3-0ubuntu1)
- KDE version of the Simon electronic memory game
- blixem (4.44.1+dfsg-2build1)
- interactive browser of sequence alignments
- bmt (0.6-1)
- software analysis benchmarking toolkit
- bodr (10-1)
- Blue Obelisk Data Repository
- boinc-app-eah-brp (0.20170426+dfsg-10build1)
- BOINC extension for Einstein@Home binary pulsar search
- boinc-app-seti (8.00~svn3701-1)
- SETI@home application for the BOINC client
- boinc-app-seti-graphics (8.00~svn3701-1)
- SETI@home application for the BOINC client (with graphics)
- boolector (1.5.118.6b56be4.121013-1build1)
- SMT solver for bit-vectors and arrays
- bowtie (1.2.2+dfsg-2)
- Ultrafast memory-efficient short read aligner
- bowtie-examples (1.2.2+dfsg-2)
- Examples for bowtie, the ultrafast memory-efficient short read aligner
- bowtie2 (2.3.4.1-1)
- ultrafast memory-efficient short read aligner
- bowtie2-examples (2.3.4.1-1)
- Examples for bowtie2
- boxshade (3.3.1-11)
- Pretty-printing of multiple sequence alignments
- bppphyview (0.6.0-1)
- Bio++ Phylogenetic Viewer
- bppsuite (2.4.0-1)
- Bio++ program suite
- bppsuite-examples (2.4.0-1)
- Examples for Bio++ program suite
- brig (0.95+dfsg-1)
- BLAST Ring Image Generator
- bwa (0.7.17-1)
- Burrows-Wheeler Aligner
- cafeobj (1.5.7-1)
- new generation algebraic specification and programming language
- cafeobj-mode (1.5.7-1)
- Emacs major mode for editing CafeOBJ source code
- caffe-tools-cpu (1.0.0-6)
- Tools for fast, open framework for Deep Learning (CPU_ONLY)
- cain (1.10+dfsg-2)
- simulations of chemical reactions
- cain-examples (1.10+dfsg-2)
- examples for cain
- cain-solvers (1.10+dfsg-2)
- solvers for cain
- calculix-ccx (2.11-1build1)
- Three-Dimensional Structural Finite Element Program
- calculix-cgx (2.11+dfsg-1)
- Calculix cgx is a 3-dimensional pre- and post-processor for fem
- camitk-actionstatemachine (4.0.4-2ubuntu4)
- pipeline replay application for the CamiTK library
- camitk-config (4.0.4-2ubuntu4)
- Computer Assisted Medical Intervention Tool Kit - config
- camitk-imp (4.0.4-2ubuntu4)
- workbench application for the CamiTK library
- canu (1.6+dfsg-2)
- single molecule sequence assembler for genomes
- casacore-data-igrf (12-1)
- International Geomagnetic Reference Field data for casacore
- casacore-data-lines (0+git2016.11.26-2)
- Table of spectral line frequencies for casacore
- casacore-data-observatories (0+git2016.11.02-1)
- Table of radio observatory coordinates for casacore
- casacore-data-sources (2-2)
- Table of ICRF reference source coordinates for casacore
- casacore-data-tai-utc (1.2)
- Difference table between TAI and UTC for casacore
- casacore-tools (2.4.1-1)
- Tools built with CASA
- cassbeam (1.1-1)
- Cassegrain antenna modelling
- cassiopee (1.0.7-1)
- index and search tool in genomic sequences
- cba (0.3.6-4.1build2)
- Continuous Beam Analysis
- cbflib-bin (0.9.2.2-1build1)
- utilities to manipulate CBF files
- cbmc (5.6-1)
- bounded model checker for C and C++ programs
- cclib (1.3.1-1)
- Parsers and algorithms for computational chemistry
- cd-hit (4.6.8-1)
- suite of programs designed to quickly group sequences
- cdbfasta (0.99-20100722-4)
- Constant DataBase indexing and retrieval tools for multi-FASTA files
- centrifuge (1.0.3~beta-2)
- rapid and memory-efficient system for classification of DNA sequences
- cernlib (20061220+dfsg3-4.3ubuntu1)
- CERNLIB data analysis suite - general use metapackage
- cernlib-core (20061220+dfsg3-4.3ubuntu1)
- CERNLIB data analysis suite - main libraries and programs
- cernlib-core-dev (20061220+dfsg3-4.3ubuntu1)
- CERNLIB data analysis suite - core development files
- (20061220+dfsg3-4.3ubuntu1)
- CERNLIB data analysis suite - extra programs
- cernlib-montecarlo (20061220+dfsg3-3.1build1)
- CERNLIB Monte Carlo libraries
- cg3 (1.0.0~r12254-1ubuntu3)
- Tools for using the 3rd edition of Constraint Grammar (CG-3)
- cgns-convert (3.3.0-5)
- CFD General Notation System - Conversion tools
- cgview (0.0.20100111-3)
- Circular Genome Viewer
- checkit-tiff (0.2.3-2)
- conformance checker for baseline TIFFs
- chemical-structures (2.2.dfsg.0-12)
- set of molecular structures in open formats
- chemps2 (1.8.5-1)
- Executable to call libchemps2-2 from the command line
- chemtool (1.6.14-2)
- chemical structures drawing program
- chimeraslayer (20101212+dfsg1-1build1)
- detects likely chimeras in PCR amplified DNA
- choreonoid (1.5.0+dfsg-0.1build3)
- Integrated robotics GUI environment
- choreonoid-data (1.5.0+dfsg-0.1build3)
- Integrated robotics GUI environment - shared data
- choreonoid-plugins-base (1.5.0+dfsg-0.1build3)
- Integrated robotics GUI environment - core plug-ins
- circlator (1.5.5-1)
- circularize genome assemblies
- circos (0.69.6+dfsg-1)
- plotter for visualizing data
- circos-tools (0.22-2)
- plotter for visualizing data - helper utilities
- ckon (0.7.1-3build6)
- automatic build tool for ROOT data analysis software
- clearcut (1.0.9-2)
- extremely efficient phylogenetic tree reconstruction
- clonalframe (1.2-7)
- inference of bacterial microevolution using multilocus sequence data
- clonalframeml (1.11-1)
- Efficient Inference of Recombination in Whole Bacterial Genomes
- clonalorigin (1.0-2)
- inference of homologous recombination in bacteria using whole genome sequences
- clustalo (1.2.4-1)
- General purpose multiple sequence alignment program for proteins
- clustalw (2.1+lgpl-5)
- global multiple nucleotide or peptide sequence alignment
- cmor-tables (3.2-1)
- MIP tables for the Climate Model Output Rewriter library
- cmtk (3.3.1-1.2build1)
- Computational Morphometry Toolkit
- code-aster-gui (1.13.1-2)
- Graphical user interface for Code_Aster - client
- code-aster-run (1.13.1-2)
- Graphical user interface for Code_Aster - server
- code-saturne (4.3.3+repack-1build1)
- General purpose Computational Fluid Dynamics (CFD) software
- code-saturne-bin (4.3.3+repack-1build1)
- General purpose Computational Fluid Dynamics (CFD) software - binaries
- code-saturne-data (4.3.3+repack-1build1)
- General purpose Computational Fluid Dynamics (CFD) software - data
- code-saturne-include (4.3.3+repack-1build1)
- General purpose Computational Fluid Dynamics (CFD) software - includes
- codonw (1.4.4-3)
- Correspondence Analysis of Codon Usage
- coinor-cbc (2.9.9+repack1-1)
- Coin-or branch-and-cut mixed integer programming solver
- coinor-clp (1.16.11+repack1-1)
- Coin-or linear programming solver
- coinor-csdp (6.1.1-1build2)
- A software package for semidefinite programming
- coinor-libcbc3 (2.9.9+repack1-1)
- Coin-or branch-and-cut mixed integer programming solver (shared libraries)
- coinor-libcgl1 (0.59.10+repack1-1)
- COIN-OR Cut Generation Library
- coinor-libclp1 (1.16.11+repack1-1)
- Coin-or linear programming solver (shared libraries)
- coinor-libcoinutils3v5 (2.10.14+repack1-1)
- Coin-or collection of utility classes (binaries and libraries)
- coinor-libdylp0 (1.6.0-1.1ubuntu2)
- Linear programming solver using the dynamic simplex algorithm
- coinor-libflopc++0v5 (1.0.6-3.1ubuntu3)
- Formulation of Linear Optimization Problems in C++
- coinor-libosi1v5 (0.107.9+repack1-1)
- COIN-OR Open Solver Interface
- coinor-libsymphony3 (5.6.16+repack1-1)
- COIN-OR solver for mixed-integer linear programs (shared libraries)
- coinor-libvol0 (1.1.7-1)
- Coin-or linear programming solver
- coinor-symphony (5.6.16+repack1-1)
- COIN-OR solver for mixed-integer linear programs
- colmap (3.4-1)
- Structure-from-Motion and Multi-View Stereo
- comet-ms (2017014-2)
- Tandem mass spectrometry (MS/MS) search engine
- concavity (0.1+dfsg.1-1)
- predictor of protein ligand binding sites from structure and conservation
- connectome-workbench (1.2.3+git41-gc4c6c90-2)
- brain visualization, analysis and discovery tool
- conservation-code (20110309.0-6)
- protein sequence conservation scoring tool
- cp2k (5.1-3)
- Ab Initio Molecular Dynamics
- cp2k-data (5.1-3)
- Ab Initio Molecular Dynamics (data files)
- cpl-plugin-amber (4.3.7+dfsg-1)
- ESO data reduction pipeline for the AMBER instrument
- cpl-plugin-amber-calib (4.3.7+dfsg-1)
- ESO data reduction pipeline calibration data downloader for AMBER
- cpl-plugin-fors (5.3.23+dfsg-1build1)
- ESO data reduction pipeline for the FORS1/2 instruments
- cpl-plugin-fors-calib (5.3.23+dfsg-1build1)
- ESO data reduction pipeline calibration data downloader for FORS2
- cpl-plugin-giraf (2.16.2+dfsg-1)
- ESO data reduction pipeline for the GIRAFFE instrument
- cpl-plugin-giraf-calib (2.16.2+dfsg-1)
- ESO data reduction pipeline calibration data downloader for GIRAFFE
- cpl-plugin-hawki (2.2.0+dfsg-1build1)
- ESO data reduction pipeline for the HAWK-I instrument
- cpl-plugin-hawki-calib (2.2.0+dfsg-1build1)
- ESO data reduction pipeline calibration data downloader for HAWK-I
- cpl-plugin-kmos (1.4.3+dfsg-1)
- ESO data reduction pipeline for the KMOS instrument
- cpl-plugin-kmos-calib (1.4.3+dfsg-1)
- ESO data reduction pipeline calibration data downloader for KMOS
- cpl-plugin-muse (2.2+dfsg-2)
- ESO data reduction pipeline for the MUSE instrument
- cpl-plugin-muse-calib (2.2+dfsg-2)
- ESO data reduction pipeline calibration data downloader for MUSE
- cpl-plugin-naco (4.4.3+dfsg-1build1)
- ESO data reduction pipeline for the NaCo instrument
- cpl-plugin-naco-calib (4.4.3+dfsg-1build1)
- ESO data reduction pipeline NaCo calibration data downloader
- cpl-plugin-sinfo (3.0.0+dfsg-1)
- ESO data reduction pipeline for the SINFONI instrument
- cpl-plugin-sinfo-calib (3.0.0+dfsg-1)
- ESO data reduction pipeline calibration data downloader for SINFONI
- cpl-plugin-uves (5.8.2+dfsg-1)
- ESO data reduction pipeline for the UVES instrument
- cpl-plugin-uves-calib (5.8.2+dfsg-1)
- ESO data reduction pipeline calibration data downloader for UVES
- cpl-plugin-vimos (3.1.9+dfsg-1build1)
- ESO data reduction pipeline for the VIMOS instrument
- cpl-plugin-vimos-calib (3.1.9+dfsg-1build1)
- ESO data reduction pipeline calibration data downloader for VIMOS
- cpl-plugin-visir (4.3.3+dfsg-1)
- ESO data reduction pipeline for the VISIR instrument
- cpl-plugin-visir-calib (4.3.3+dfsg-1)
- ESO data reduction pipeline calibration data downloader for VISIR
- cpl-plugin-xshoo (2.9.3+dfsg-1build1)
- ESO data reduction pipeline for the XSHOOTER instrument
- cpl-plugin-xshoo-calib (2.9.3+dfsg-1build1)
- ESO data reduction pipeline calibration data downloader for XSHOOTER
- crac (2.5.0+dfsg-2)
- integrated RNA-Seq read analysis
- critterding (1.0-beta12.1-1.3)
- Evolving Artificial Life
- ctdconverter (2.0-4)
- Convert CTD files into Galaxy tool and CWL CommandLineTool files
- ctsim (5.2.0-4)
- Computed tomography simulator
- ctsim-help (5.2.0-4)
- Online help file for CTSim
- cutadapt (1.15-1)
- Clean biological sequences from high-throughput sequencing reads
- cwltool (1.0.20180302231433-1)
- Common Workflow Language reference implementation
- daligner (1.0+20180108-1)
- local alignment discovery between long nucleotide sequencing reads
- dans-gdal-scripts (0.24-1build4)
- GDAL contributed tools by Geographic Information Network of Alaska
- dascrubber (0~20180108-1)
- alignment-based scrubbing pipeline for DNA sequencing reads
- datalad (0.9.3-1)
- data files crawler and data distribution
- dawg (1.2-1build1)
- program to simulate the evolution of recombinant DNA sequences
- dazzdb (1.0+20180115-1)
- manage nucleotide sequencing read data
- dcm2niix (1.0.20171215-1)
- next generation DICOM to NIfTI converter
- dcmtk (3.6.2-3build3)
- OFFIS DICOM toolkit command line utilities
- debian-astro-logo (1.1ubuntu2)
- Debian Astronomy Pure Blends Logo
- deepnano (0.0+20160706-1ubuntu1)
- alternative basecaller for MinION reads of genomic sequences
- deepnano-data (0.0+20160706-1ubuntu1)
- alternative basecaller for MinION reads of genomic sequences (data)
- dh-r (20180403)
- Debian helper tools for packaging R libraries
- dialign (2.2.1-9)
- Segment-based multiple sequence alignment
- dialign-tx (1.0.2-11)
- Segment-based multiple sequence alignment
- dialign-tx-data (1.0.2-11)
- Segment-based multiple sequence alignment (data files)
- diamond-aligner (0.9.17+dfsg-1)
- accelerated BLAST compatible local sequence aligner
- dicomnifti (2.32.1-1build1)
- converts DICOM files into the NIfTI format
- dicompyler (0.4.2.0-1)
- radiation therapy research platform
- dimbl (0.15-2)
- Distributed Memory Based Learner
- dindel (1.01+dfsg-4build2)
- determines indel calls from short-read data
- discosnp (1.2.6-2)
- discovering Single Nucleotide Polymorphism from raw set(s) of reads
- disulfinder (1.2.11-7)
- cysteines disulfide bonding state and connectivity predictor
- disulfinder-data (1.2.11-7)
- data files for predictor of disulfide bonds in proteins
- dlmodelbox (0.1.2-2)
- Swiss Army Knife of Deep Learning Models
- dnaclust (3-5)
- tool for clustering millions of short DNA sequences
- dotter (4.44.1+dfsg-2build1)
- detailed comparison of two genomic sequences
- dozzaqueux (3.51-2)
- simulator for chemical mixtures
- dozzaqueux-data (3.51-2)
- databases for chemical mixtures
- dpuser (3.3+p1+dfsg-2build1)
- Interactive language for handling numbers, strings, and matrices
- drawxtl (5.5-3build2)
- crystal structure viewer
- drslib (0.3.0a3-5build1)
- Command-line tools for the Data Reference Syntax library
- dsdp (5.8-9.4)
- Software for Semidefinite Programming
- dssp (3.0.0-2)
- protein secondary structure assignment based on 3D structure
- dwgsim (0.1.11-3build1)
- short sequencing read simulator
- dx (1:4.4.4-10build2)
- OpenDX (IBM Visualization Data Explorer) - main package
- dxf2gcode (20170925-4)
- prepares drawings of parts for automatic machine tools
- dxsamples (4.4.0-3)
- Sample programs for the OpenDX Data Explorer
- e-mem (1.0.1-1)
- Efficient computation of Maximal Exact Matches for very large genomes
- e00compr (1.0.1-3)
- Program to read/write Arcinfo compressed E00 files
- ea-utils (1.1.2+dfsg-4build1)
- command-line tools for processing biological sequencing data
- easychem (0.6-8build1)
- Draw high-quality molecules and 2D chemical formulas
- ecaccess (4.0.1-1)
- clients to access ECMWF facilities
- ecflow-client (4.8.0-1)
- Client tools for Meteorological workflow
- ecflow-server (4.8.0-1)
- Meteorological workflow controller - server
- ecopcr (0.5.0+dfsg-1)
- estimate PCR barcode primers quality
- edfbrowser (1.62+dfsg-1)
- viewer for biosignal storage files such as bdf and edf
- edtsurf (0.2009-5)
- triangulated mesh surfaces for protein structures
- eficas (6.4.0-1-2)
- Graphical editor for Code Aster command files
- elastix (4.8-12build1)
- toolbox for rigid and nonrigid registration of images
- elk-lapw (4.0.15-2build1)
- All-Electron Density-Functional Electronic Structure Code
- elki (0.7.1-6)
- Data mining algorithm development framework
- elki-dev (0.7.1-6)
- Data mining algorithm development framework - development files
- embassy-domainatrix (0.1.660-2)
- Extra EMBOSS commands to handle domain classification file
- embassy-domalign (0.1.660-2)
- Extra EMBOSS commands for protein domain alignment
- embassy-domsearch (1:0.1.660-2)
- Extra EMBOSS commands to search for protein domains
- emboss (6.6.0+dfsg-6build1)
- European molecular biology open software suite
- emboss-data (6.6.0+dfsg-6build1)
- data files for the EMBOSS package
- emboss-explorer (2.2.0-9)
- web-based GUI to EMBOSS
- engauge-digitizer (10.4+ds.1-1)
- interactively extracts numbers from bitmap graphs or maps
- ent (1.2debian-1build1)
- pseudorandom number sequence test program
- epsilon-bin (0.9.2+dfsg-2)
- Library for wavelet image compression - tools
- ergo (3.5-1)
- Quantum chemistry program for large-scale calculations
- eso-midas (17.02pl1.2-2build1)
- European Southern Observatory Munich Image Data Analysis System
- eso-midas-testdata (17.02pl1.2-2build1)
- Test data files for ESO-MIDAS
- eso-pipelines (1.2)
- ESO VLT Instrument pipeline collection
- esorex (3.13-4)
- Execution Tool for European Southern Observatory pipelines
- esys-particle (2.3.5+dfsg1-2build1)
- Software for particle-based numerical modelling. MPI version.
- etsf-io (1.0.4-2)
- Binary tools to check, merge and read ETSF files
- examl (3.0.20-1)
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference
- exonerate (2.4.0-3)
- generic tool for pairwise sequence comparison
- expeyes (4.3.6+dfsg-6)
- hardware & software framework for developing science experiments
- expeyes-clib (4.3.6+dfsg-6)
- hardware & software framework for developing science experiments
- eyes17 (4.3.6+dfsg-6)
- hardware & software framework for developing science experiments
- falcon (1.8.8-1ubuntu1)
- diploid-aware genome assembly of single-molecule sequencing reads
- fast5 (0.6.5-1)
- utilities for manipulating Oxford Nanopore Fast5 files
- fastahack (0.0+20160702-1)
- utility for indexing and sequence extraction from FASTA files
- fastaq (3.17.0-1)
- FASTA and FASTQ file manipulation tools
- fastdnaml (1.2.2-12)
- Tool for construction of phylogenetic trees of DNA sequences
- fastlink (4.1P-fix100+dfsg-1build1)
- faster version of pedigree programs of Linkage
- fastlink-doc (4.1P-fix100+dfsg-1build1)
- Some papers about fastlink
- fastml (3.1-3)
- maximum likelihood ancestral amino-acid sequence reconstruction
- fastqc (0.11.5+dfsg-6)
- quality control for high throughput sequence data
- fastqtl (2.184+dfsg-5build4)
- Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
- fasttree (2.1.10-1)
- phylogenetic trees from alignments of nucleotide or protein sequences
- fastx-toolkit (0.0.14-5)
- FASTQ/A short nucleotide reads pre-processing tools
- fcc (2.8-1build1)
- Script to compile C/C++ programs and link to Fortran libraries
- feedgnuplot (1.48-1)
- Pipe-oriented frontend to Gnuplot
- ffindex (0.9.9.7-4)
- simple index/database for huge amounts of small files
- figtree (1.4.3+dfsg-5)
- graphical phylogenetic tree viewer
- fitgcp (0.0.20150429-1)
- fitting genome coverage distributions with mixture models
- fitscut (1.4.4-4build4)
- Extract cutouts from FITS image format files
- fitsh (0.9.2-1)
- Software package for astronomical image processing
- fitspng (1.3-1)
- FITS to PNG converter
- fitsverify (4.18-1build2)
- FITS File Format-Verification Tool
- fityk (1.3.1-3)
- general-purpose nonlinear curve fitting and data analysis
- flexbar (1:3.0.3-2)
- flexible barcode and adapter removal for sequencing platforms
- (5.0-8)
- Trajectory model for tracing air transport phenomena
- fml-asm (0.1-4)
- tool for assembling Illumina short reads in small regions
- foma-bin (0.9.18+r243-1build1)
- Xerox-compatible finite-state compiler - library
- form (4.2.0+git20170914-1)
- Symbolic manipulation system
- fractalnow (0.8.2-1build1)
- Fast, advanced fractal generator
- free42-nologo (1.4.77-1.2)
- Free42 is a re-implementation of the HP-42S calculator
- freebayes (1.1.0-1)
- Bayesian haplotype-based polymorphism discovery and genotyping
- freecad (0.16.6712+dfsg1-1ubuntu2)
- Extensible Open Source CAx program
- freecontact (1.0.21-6build2)
- fast protein contact predictor
- freediams (0.9.4-2)
- pharmaceutical drug prescription and interaction manager
- freemedforms-common-resources (0.9.4-2)
- common data for the FreeMedForms project applications
- freemedforms-emr (0.9.4-2)
- electronic medical record manager
- freemedforms-emr-resources (0.9.4-2)
- data for the FreeMedForms EMR
- freemedforms-freedata (0.9.4-2)
- free extra-data for the FreeMedForms project
- freemedforms-i18n (0.9.4-2)
- translations of the FreeMedForms project
- freemedforms-libs (0.9.4-2)
- common libs for the FreeMedForms project
- freemedforms-project (0.9.4-2)
- set of medical applications for health professionals
- freemedforms-theme (0.9.4-2)
- theme for the FreeMedForms project
- frog (0.13.7-1build2)
- tagger and parser for natural languages (runtime)
- frogdata (0.13-1)
- Data files for Frog
- fsa (1.15.9+dfsg-3)
- Fast Statistical Alignment of protein, RNA or DNA sequences
- fsm-lite (1.0-2)
- frequency-based string mining (lite)
- ftools-fv (5.4+dfsg-4)
- Tool for viewing and editing FITS format files
- ftools-pow (5.4+dfsg-4)
- Curve plotting and image display interface tool
- funtools (1.4.7-2)
- Minimal buy-in FITS utility package
- fxt-tools (0.3.7-1)
- Multithreaded tracing library
- g3data (1:1.5.3-2.1build1)
- extract data from scanned graphs
- gabedit (2.4.8-3build1)
- graphical user interface to Ab Initio packages
- galileo (0.5.1-5)
- Utility to securely synchronize a Fitbit device with the Fitbit web service
- galileo-daemon (0.5.1-5)
- Utility to securely synchronize a Fitbit device - daemon
- gamgi (0.17.3-1)
- General Atomistic Modelling Graphic Interface (GAMGI)
- gamgi-data (0.17.3-1)
- General Atomistic Modelling Graphic Interface (data)
- garli (2.1-2)
- phylogenetic analysis of molecular sequence data using maximum-likelihood
- garli-examples (2.1-2)
- phylogenetic analysis of molecular sequence data (examples)
- garlic (1.6-2)
- visualization program for biomolecules
- gasic (0.0.r19-3)
- genome abundance similarity correction
- gausssum (3.0.1.1-1)
- parse and display Gaussian, GAMESS, and etc's output
- gazebo9 (9.0.0+dfsg5-3ubuntu1)
- Open Source Robotics Simulator - Binaries
- gazebo9-common (9.0.0+dfsg5-3ubuntu1)
- Open Source Robotics Simulator - Shared files
- gazebo9-plugin-base (9.0.0+dfsg5-3ubuntu1)
- Open Source Robotics Simulator - base plug-ins
- gbrowse (2.56+dfsg-3build1)
- GMOD Generic Genome Browser
- gbrowse-calign (2.56+dfsg-3build1)
- CAlign helper
- gbrowse-data (2.56+dfsg-3build1)
- Sample data to use GBrowse
- gbutils (5.7.0-1)
- utilities for command line econometrics
- gchempaint (0.14.17-1ubuntu1)
- 2D chemical structures editor for the GNOME2 desktop
- gcrystal (0.14.17-1ubuntu1)
- lightweight crystal structures visualizer
- gcu-bin (0.14.17-1ubuntu1)
- GNOME chemistry utils (helper applications)
- gcu-plugin (0.14.17-1ubuntu1)
- GNOME chemistry utils (browser plugin)
- gcx (1.3-1.1build1)
- astronomical image processing and photometry gtk+ application
- gdal-bin (2.2.3+dfsg-2)
- Geospatial Data Abstraction Library - Utility programs
- gdal-data (2.2.3+dfsg-2)
- Geospatial Data Abstraction Library - Data files
- gdis (0.90-5build1)
- molecular and crystal model viewer
- gdis-data (0.90-5build1)
- molecular and crystal model viewer (data files)
- gdl-astrolib (2018.02.16+dfsg-1)
- Low-level astronomy software for GDL
- gdl-coyote (2016.11.13-2)
- GDL library from D. Fannings IDL courses
- gdl-mpfit (1.85+2017.01.03-1)
- Robust non-linear least squares curve fitting for GDL
- gdpc (2.2.5-8)
- visualiser of molecular dynamic simulations
- gdpc-examples (2.2.5-8)
- example files for the gdpc program
- geant321 (1:3.21.14.dfsg-11build1)
- [Physics] Particle detector description and simulation tool
- geant321-data (1:3.21.14.dfsg-11build1)
- [Physics] Data for GEANT 3.21 detector simulator
- gelemental (1.2.0-11)
- Periodic Table viewer
- genometools (1.5.10+ds-2)
- versatile genome analysis toolkit
- genometools-common (1.5.10+ds-2)
- shared data files for GenomeTools
- geographiclib-tools (1.49-2)
- C++ library to solve some geodesic problems -- tools
- geotiff-bin (1.4.2-2build1)
- GeoTIFF (geografic enabled TIFF) library -- tools
- getdata (0.2-2)
- management of external databases
- gff2aplot (2.0-9)
- pair-wise alignment-plots for genomic sequences in PostScript
- gff2ps (0.98d-6)
- produces PostScript graphical output from GFF-files
- gfsview (20121130+dfsg-4build1)
- graphical viewer for Gerris simulation files
- gfsview-batch (20121130+dfsg-4build1)
- batch-version of viewer for Gerris simulation files
- ghkl (5.0.0.2449-1)
- diffractometer computation control application
- giella-core (0.1.1~r129227+svn121148-1)
- GTCORE files for building Giellatekno language packages
- giella-sme (0.0.20150917~r121176-2)
- Giellatekno single language data for North Saami
- giella-sme-dev (0.0.20150917~r121176-2)
- Giellatekno single language data for North Saami (dev extras)
- giira (0.0.20140625-1)
- RNA-Seq driven gene finding incorporating ambiguous reads
- ginga (2.7.0-2)
- Astronomical image viewer
- ginkgocadx (3.8.7-1build1)
- Medical Imaging Software and complete DICOM Viewer
- glam2 (1064-4)
- gapped protein motifs from unaligned sequences
- glueviz (0.9.1+dfsg-1)
- Linked data visualization
- gmt (5.4.3+dfsg-1)
- Generic Mapping Tools
- gmt-common (5.4.3+dfsg-1)
- Generic Mapping Tools - Architecture-independent files
- gmt-dcw (1.1.3-1)
- Digital Chart of the World (DCW) for GMT
- gmt-gshhg (2.3.7-2)
- Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
- gmt-gshhg-full (2.3.7-2)
- Full resolution coastlines for the Generic Mapping Tools
- gmt-gshhg-high (2.3.7-2)
- High resolution coastlines for the Generic Mapping Tools
- gmt-gshhg-low (2.3.7-2)
- Low resolution coastlines for the Generic Mapping Tools
- gnuastro (0.5-1)
- GNU Astronomy Utilities programs
- gpaw (1.3.0-2ubuntu1)
- DFT and beyond within the projector-augmented wave method
- gpaw-data (0.9.20000-1)
- gpaw datasets/setups
- gperiodic (3.0.2-1)
- periodic table application
- gpx (2.5.2-3)
- Gcode to x3g conversion post processor
- gpx2shp (0.71.0-4build1)
- convert GPS or GPX file to ESRI Shape file
- gr-fcdproplus (3.7.25.4b6464b-5)
- Funcube Dongle Pro Plus controller for GNU Radio
- grads (3:2.2.0-2)
- Grid Analysis and Display System for earth science data
- graphlan (1.1-3)
- circular representations of taxonomic and phylogenetic trees
- grass (7.4.0-1)
- Geographic Resources Analysis Support System (GRASS GIS)
- grass-core (7.4.0-1)
- GRASS GIS core components
- grass-doc (7.4.0-1)
- GRASS GIS user documentation
- grass-gui (7.4.0-1)
- GRASS GIS graphical user interfaces
- gravit (0.5.1+dfsg-2build1)
- visually stunning gravity simulator
- gravit-data (0.5.1+dfsg-2build1)
- data files for Gravit
- gri (2.12.26-1build1)
- a language for scientific illustration
- gri-el (2.12.26-1build1)
- Emacs major-mode for gri, a language for scientific graphics
- grinder (0.5.4-4)
- Versatile omics shotgun and amplicon sequencing read simulator
- gromacs (2018.1-1)
- Molecular dynamics simulator, with building and analysis tools
- gromacs-data (2018.1-1)
- GROMACS molecular dynamics sim, data and documentation
- gromacs-mpich (2018.1-1)
- Molecular dynamics sim, binaries for MPICH parallelization
- gromacs-openmpi (2018.1-1)
- Molecular dynamics sim, binaries for OpenMPI parallelization
- gubbins (2.3.1-1)
- phylogenetic analysis of genome sequences
- gvb (1.4-1build1)
- visual simulator of 1 and 2-dimensional vibrations
- gwama (2.2.2+dfsg-1)
- Genome-Wide Association Meta Analysis
- gwyddion (2.50-2)
- Scanning Probe Microscopy visualization and analysis tool
- gwyddion-common (2.50-2)
- architecture-independent files for Gwyddion SPM analysis tool
- gwyddion-plugins (2.50-2)
- plugins for Gwyddion SPM analysis tool
- gyoto (1.2.0-4)
- General relativistic geodesic integration and ray-tracing
- gyoto-bin (1.2.0-4)
- General relativistic ray-tracing command-line interface
- h5utils (1.13-2)
- HDF5 files visualization tools
- harminv (1.4-2)
- extraction of complex frequencies and amplitudes from time series
- harvest-tools (1.3-1build1)
- archiving and postprocessing for reference-compressed genomic multi-alignments
- hdf-compass (0.6.0-1)
- viewer for HDF5 and related formats
- hdf5-helpers (1.10.0-patch1+docs-4)
- Hierarchical Data Format 5 (HDF5) - Helper tools
- hdf5-tools (1.10.0-patch1+docs-4)
- Hierarchical Data Format 5 (HDF5) - Runtime tools
- herisvm (0.7.0-1)
- machine learning tools for classification algorithms
- herwig++ (2.6.0-1.1build2)
- Multi-purpose event generator for high energy physics
- herwig++-data (2.6.0-1.1build2)
- Herwig++ Data
- herwig++-dev (2.6.0-1.1build2)
- Herwig++ development files
- hfst (3.13.0~r3461-2)
- Helsinki Finite-State Transducer Technology
- hfst-ospell (0.4.5~r343-2.1build2)
- Spell checker library and tool based on HFST
- hhsuite (3.0~beta2+dfsg-3)
- sensitive protein sequence searching based on HMM-HMM alignment
- hhsuite-data (3.0~beta2+dfsg-3)
- sensitive protein sequence searching based on HMM-HMM alignment (data)
- hidrd (0.2.0-11)
- tools for parsing and generating HID report descriptors
- hilive (1.1-1)
- realtime alignment of Illumina reads
- hinge (0.5.0-3)
- long read genome assembler based on hinging
- hisat2 (2.1.0-1)
- graph-based alignment of short nucleotide reads to many genomes
- hmmer (3.1b2+dfsg-5ubuntu1)
- profile hidden Markov models for protein sequence analysis
- hmmer2 (2.3.2+dfsg-5)
- profile hidden Markov models for protein sequence analysis
- hmmer2-pvm (2.3.2+dfsg-5)
- HMMER programs with PVM (Parallel Virtual Machine) support
- hodie (1.5-2build1)
- prints the date in latin
- hpcc (1.5.0-1)
- HPC Challenge benchmark
- htcondor (8.6.8~dfsg.1-2)
- distributed workload management system
- hyphy-common (2.2.7+dfsg-1)
- Hypothesis testing using Phylogenies (common files)
- hyphy-mpi (2.2.7+dfsg-1)
- Hypothesis testing using Phylogenies (MPI version)
- hyphy-pt (2.2.7+dfsg-1)
- Hypothesis testing using Phylogenies (pthreads version)
- hyphygui (2.2.7+dfsg-1)
- Hypothesis testing using Phylogenies (GTK+ gui)
- idba (1.1.3-2)
- iterative De Bruijn Graph short read assemblers
- ifrit (4.1.2-5build1)
- powerful tool for visualizing 3-dimensional data sets
- imagej (1.51q-1)
- Image processing program with a focus on microscopy images
- imagevis3d (3.1.0-6)
- desktop volume rendering application for large data
- imview (1.1.9c-17build1)
- Image viewing and analysis application
- indelible (1.03-3)
- powerful and flexible simulator of biological evolution
- indigo-utils (1.1.12-2)
- Organic Chemistry Toolkit Utilities
- infernal (1.1.2-1)
- inference of RNA secondary structural alignments
- inhomog (0.1.7.1-1)
- kinematical backreaction and average scale factor evolution
- ipig (0.0.r5-2build1)
- integrating PSMs into genome browser visualisations
- iqtree (1.6.1+dfsg-1)
- efficient phylogenetic software by maximum likelihood
- iraf (2.16.1+2018.03.10-2)
- Image Reduction and Analysis Facility
- iraf-dev (2.16.1+2018.03.10-2)
- Image Reduction and Analysis Facility (development files)
- iraf-noao (2.16.1+2018.03.10-2)
- IRAF NOAO data reduction package
- iraf-noao-dev (2.16.1+2018.03.10-2)
- IRAF NOAO data reduction package (development files)
- iraf-rvsao (2.8.3-1)
- IRAF package to obtain radial velocities from spectra
- iraf-wcstools (3.9.5-2)
- Handle the WCS of a FITS image (IRAF package)
- ismrmrd-schema (1.3.3-1build2)
- schema for ISMRMRD
- ismrmrd-tools (1.3.3-1build2)
- command-line tools for ISMRMRD
- itksnap (3.6.0-2)
- semi-automatic segmentation of structures in 3D images
- iva (1.0.9+ds-4ubuntu1)
- iterative virus sequence assembler
- jaligner (1.0+dfsg-4)
- Smith-Waterman algorithm with Gotoh's improvement
- jalview (2.7.dfsg-5)
- multiple alignment editor
- jblas (1.2.4-1)
- fast linear algebra library for Java
- jellyfish (2.2.8-3build1)
- count k-mers in DNA sequences
- jellyfish-examples (2.2.8-3build1)
- count k-mers in DNA sequences (examples for testing)
- jellyfish1 (1.1.11-3)
- count k-mers in DNA sequences
- jemboss (6.6.0+dfsg-6build1)
- graphical user interface to EMBOSS
- jmodeltest (2.1.10+dfsg-5)
- HPC selection of models of nucleotide substitution
- jmol (14.6.4+2016.11.05+dfsg1-3.1)
- Molecular Viewer
- jsamp (1.3.5-1)
- Java Simple Application Messaging Protocol tool for VO
- jupyter-notebook (5.2.2-1)
- Jupyter interactive notebook
- kalign (1:2.03+20110620-4)
- Global and progressive multiple sequence alignment
- kalzium (4:17.12.3-0ubuntu1)
- periodic table and chemistry tools
- kalzium-data (4:17.12.3-0ubuntu1)
- data files for Kalzium
- khmer-common (2.1.2+dfsg-3)
- common files for the khmer project tools
- kineticstools (0.6.1+20161222-1ubuntu1)
- detection of DNA modifications
- kineticstools-data (0.6.1+20161222-1ubuntu1)
- detection of DNA modifications -- data files
- king-probe (2.13.110909-2)
- Evaluate and visualize protein interatomic packing
- kissplice (2.4.0-p1-2)
- Detection of various kinds of polymorphisms in RNA-seq data
- klustakwik (2.0.1-1build1)
- automatic sorting of the samples (spikes) into clusters
- kmc (2.3+dfsg-5)
- count kmers in genomic sequences
- kmer (0~20150903+r2013-3)
- suite of tools for DNA sequence analysis
- konclude (0.6.2~dfsg-3)
- tableau-based description logic reasoner for the semantic web
- kraken (1.1-2)
- assigning taxonomic labels to short DNA sequences
- kst (2.0.8-2)
- scientific data plotting tool
- kstars (5:2.9.4-1ubuntu1)
- desktop planetarium, observation planning and telescope control
- kstars-data (5:2.9.4-1ubuntu1)
- data files for KStars desktop planetarium
- (1.1r1-9.1)
- Tycho-2 star catalog for KStars
- kxterm (20061220+dfsg3-4.3ubuntu1)
- CERNLIB data analysis suite - KUIP terminal emulator
- lamarc (2.1.10.1+dfsg-2)
- Likelihood Analysis with Metropolis Algorithm using Random Coalescence
- lambda-align (1.0.3-3)
- Local Aligner for Massive Biological DatA
- lammps (0~20161109.git9806da6-7)
- Molecular Dynamics Simulator
- last-align (921-1)
- genome-scale comparison of biological sequences
- leaff (0~20150903+r2013-3)
- biological sequence library utilities and applications
- lefse (1.0.8-1)
- determine features of organisms, clades, taxonomic units, genes
- lhapdf-pdfsets-minimal (5.9.1-6)
- Minimal PDF Sets of LHAPDF
- libadios-bin (1.13.0-1)
- ADIOS Adaptable IO system for simulations - binaries
- libadios-examples (1.13.0-1)
- Examples for the ADIOS Adaptable IO system
- libapertium3-3.4-0 (3.4.2~r68466-4)
- Shared library for Apertium
- libball1.4-data (1.4.3~beta1-4)
- Biochemical Algorithms Library (data files)
- libbiod0 (0.1.0-5build1)
- bioinformatics library in D
- libbiojava-java (1:1.7.1-7)
- Java API to biological data and applications (default version)
- libbiojava-java-demos (1:1.7.1-7)
- Example programs for BioJava
- libbiojava1.7-java (1:1.7.1-7)
- Java API to biological data and applications (version 1.7)
- libcamitk4 (4.0.4-2ubuntu4)
- Computer Assisted Medical Intervention Tool Kit - runtime
- libcassie1v5 (1.0.7-1)
- library implementating search algorithms
- libcg3-1 (1.0.0~r12254-1ubuntu3)
- Runtime for CG-3
- libclhep2.1v5 (2.1.4.1+dfsg-1)
- CLHEP: A Class Library for High Energy Physics
- libdivsufsort3 (2.0.1-3)
- fast suffix array construction
- libdynamicedt3d1.8 (1.8.1+dfsg-1)
- Incrementally updatable Euclidean distance transform library
- libeccodes-data (2.6.0-2)
- GRIB and BUFR enecoding/encoding software library - data
- libej0 (4.3.6+dfsg-6)
- hardware & software framework for developing science experiments
- libgenometools0 (1.5.10+ds-2)
- versatile genome analysis library
- libgfsgl0 (20121130+dfsg-4build1)
- graphical viewer for Gerris simulation files. Shared library
- libghemical-data (3.0.0-4.1build2)
- Molecular Modelling Library (data files)
- libgiac0 (1.2.3.57+dfsg1-2build3)
- Computer Algebra System C++ library
- libgnuradio-fcdproplus3.7.11 (3.7.25.4b6464b-5)
- Funcube Dongle Pro Plus controller for GNU Radio (runtime)
- libgrits5 (0.8.1-3)
- Grits is a Virtual Globe library
- libgtkdatabox-0.9.3-0-glade (1:0.9.3.0+dfsg-3)
- Gtk+ library to display large amounts of numerical data (glade API)
- libgtkdatabox-0.9.3-0-libglade (1:0.9.3.0+dfsg-3)
- Gtk+ library to display large amounts of numerical data (glade lib)
- libgyoto6 (1.2.0-4)
- Gyoto framework main library an standard plug-in
- libhdf5-jni (1.10.0-patch1+docs-4)
- native library used by libhdf5-java
- libhfstospell9 (0.4.5~r343-2.1build2)
- HFST spell checker runtime libraries
- libismrmrd1.3 (1.3.3-1build2)
- ISMRM Raw Data format (ISMRMRD)
- libjs-mgrs (0.0.3-3)
- Javascript for converting between WGS84 lat/lng and MGRS coordinates
- libjs-proj4 (2.3.17+ds-1)
- JavaScript library to transform point coordinates systems
- liblas-bin (1.8.1-6build1)
- ASPRS LiDAR data translation toolset
- liblemon-utils (1.3.1+dfsg-1)
- Library for Efficient Modeling and Optimization in Networks (utilities)
- libliggghts3 (3.7.0+repack1-1)
- Open Source DEM Particle Simulation Software. Shared library
- liblinear-tools (2.1.0+dfsg-2)
- Standalone applications for LIBLINEAR
- liblorene-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu4)
- liblorene shared library
- liblorene-export-debian0 (0.0.0~cvs20161116+dfsg-1ubuntu4)
- liblorene_export shared library
- liblorenef77-debian1 (0.0.0~cvs20161116+dfsg-1ubuntu4)
- liblorenef77 shared library
- liblttoolbox3-3.3-0v5 (3.3.3~r68466-2)
- Shared library for lttoolbox
- libmstoolkit-tools (82-6)
- libraries for manipulating mass spectrometry data - tools
- libncarg-bin (6.4.0-9)
- NCAR command-language library - development tools
- libncarg-data (6.4.0-9)
- NCAR command-language library - Data
- libngram-tools (1.3.2-3)
- OpenGRM n-gram Language Modeling toolkit
- libocas-tools (0.97+dfsg-3)
- Standalone applications implementing the OCAS solver
- liboctomap1.8 (1.8.1+dfsg-1)
- 3D occupancy grid mapping approach library for mapping
- liboctovis1.8 (1.8.1+dfsg-1)
- Visualization library for OctoMap
- libopenfoam (4.1+dfsg1-2)
- Set of programs for Computational Fluid Dynamics (CFD). Libraries
- libopengm-bin (2.3.6+20160905-1build2)
- command line tools for OpenGM
- libotb (6.4.0+dfsg-1)
- ORFEO Toolbox library metapackage
- libotb-apps (6.4.0+dfsg-1)
- Plugins for ORFEO Toolbox applications
- libpwiz-tools (3.0.10827-4)
- ProteoWizard command line tools
- libqgis-customwidgets (2.18.17+dfsg-1)
- QGIS custom widgets for Qt Designer
- libqtpropertybrowser4 (4.0.4-2ubuntu4)
- Qt Property Browser Library - runtime
- librasterlite2-1 (1.0.0~rc0+devel1-6)
- library for huge raster coverages using a SpatiaLite DBMS
- librsl1 (1.43-1.2build1)
- TRMM Radar Software Library
- libsilo-bin (4.10.2.real-2)
- Utilities to manipulate libsilo files
- libsquizz (0.99d+dfsg-1)
- Conversion libs used by squizz genetic sequence converter
- libstxxl1v5 (1.4.1-2build1)
- C++ Standard Template Library for extra large datasets
- libvcflib-tools (1.0.0~rc1+dfsg1-6)
- C++ library for parsing and manipulating VCF files (tools)
- libxy-bin (1.3-1.1build1)
- xylib - utilities
- libyade (2018.02b-1)
- Platform for discrete element modeling. Libraries
- liggghts (3.7.0+repack1-1)
- Open Source DEM Particle Simulation Software.
- limereg (1.4.1-3build3)
- Lightweight Image Registration
- linguider (4.1.1-1)
- Astronomical autoguiding program for Linux
- litl-tools (0.1.9-2)
- Lightweight Trace Library - tools
- logcentral (2.7-1.1build1)
- Logging service for distributed applications
- logcentral-tools (2.7-1.1build1)
- Logging service for distributed applications
- logol (1.7.7-1build1)
- Pattern matching tool using Logol language
- logol-bin (1.7.7-1build1)
- Pattern matching tool using Logol language
- loki (2.4.7.4-7)
- MCMC linkage analysis on general pedigrees
- loki-doc (2.4.7.4-7)
- MCMC linkage analysis on general pedigrees (PS manual)
- looptools (2.8-1build1)
- Integral Evaluator of One-loop Feynman Diagram
- lorene (0.0.0~cvs20161116+dfsg-1ubuntu4)
- framework for numerical relativity
- lorene-codes-src (0.0.0~cvs20161116+dfsg-1ubuntu4)
- source files of LORENE-based codes
- ltrsift (1.0.2-7)
- postprocessing and classification of LTR retrotransposons
- ltrsift-examples (1.0.2-7)
- example data for LTRsift
- lttoolbox-dev (3.3.3~r68466-2)
- Development tools and library for lttoolbox
- lutefisk (1.0.7+dfsg-4build1)
- de novo interpretation of peptide CID spectra
- lxi-tools (1.15-1)
- LAN eXtensions for Instrumentation (LXI) software interface
- macs (2.1.1.20160309-2)
- Model-based Analysis of ChIP-Seq on short reads sequencers
- macsyfinder (1.0.5-1)
- detection of macromolecular systems in protein datasets
- mafft (7.310-1)
- Multiple alignment program for amino acid or nucleotide sequences
- mapdamage (2.0.8+dfsg-1)
- tracking and quantifying damage patterns in ancient DNA sequences
- mapsembler2 (2.2.4+dfsg-1)
- bioinformatics targeted assembly software
- maq (0.7.1-7)
- maps short fixed-length polymorphic DNA sequence reads to reference sequences
- maqview (0.2.5-8)
- graphical read alignment viewer for short gene sequences
- mash (2.0-2)
- fast genome and metagenome distance estimation using MinHash
- massxpert (4.1.0-1)
- transitional package
- massxpert-data (4.1.0-1)
- transitional package
- maude (2.7-2)
- high-performance logical framework
- mauve-aligner (2.4.0+4734-3)
- multiple genome alignment
- mayavi2 (4.5.0-1)
- scientific visualization package for 2-D and 3-D data
- mbt (3.2.16-1)
- memory-based tagger-generator and tagger
- mbtserver (0.11-1)
- Server extensions for the MBT tagger
- meep (1.3-4build2)
- software package for FDTD simulation
- meep-lam4 (1.3-2build2)
- software package for FDTD simulation, parallel (OpenMPI) version
- meep-mpi-default (1.3-3build5)
- software package for FDTD simulation, parallel (OpenMPI) version
- meep-mpich2 (1.3-4build3)
- software package for FDTD simulation, parallel (OpenMPI) version
- meep-openmpi (1.3-3build4)
- software package for FDTD simulation, parallel (OpenMPI) version
- melting (4.3.1+dfsg-3)
- compute the melting temperature of nucleic acid duplex
- melting-gui (4.3.1+dfsg-3)
- graphical interface to compute the melting temperature of nucleic acid duplex
- merkaartor (0.18.3+ds-3)
- map editor for OpenStreetMap.org
- meryl (0~20150903+r2013-3)
- in- and out-of-core kmer counting and utilities
- metaphlan2 (2.7.5-1)
- Metagenomic Phylogenetic Analysis
- metaphlan2-data (2.6.0+ds-3)
- data package for Metagenomic Phylogenetic Analysis
- metastudent (2.0.1-5)
- predictor of Gene Ontology terms from protein sequence
- metastudent-data (2.0.1-3)
- predictor of Gene Ontology terms from protein sequence - data files
- metastudent-data-2 (1.0.0-3)
- predictor of Gene Ontology terms from protein sequence - data #2
- metview (5.0.0~beta.1-1build1)
- Interactive data visualization and analysis environment,
- metview-data (5.0.0~beta.1-1build1)
- Data needed for the Metview data analysis environment
- mhap (2.1.1+dfsg-1)
- locality-sensitive hashing to detect long-read overlaps
- mia-doctools (2.4.6-1)
- Helper scripts for run-time document creation
- mia-tools (2.4.6-1)
- Command line tools for gray scale image processing
- mia-viewit (1.0.5-1)
- Viewer program for 3D data sets created by using MIA
- mialmpick (0.2.14-1)
- Tools for landmark picking in 3D volume data sets
- microbegps (1.0.0-2)
- explorative taxonomic profiling tool for metagenomic data
- microbiomeutil (20101212+dfsg1-1build1)
- Microbiome Analysis Utilities
- microbiomeutil-data (20101212+dfsg1-1build1)
- Reference 16S sequences and NAST-alignments used by microbiomeutil tools
- microhope (4.3.6+dfsg-6)
- hardware & software framework to learn microcontrollers
- minc-tools (2.3.00+dfsg-2)
- MNI medical image format tools
- minia (1.6906-2)
- short-read biological sequence assembler
- miniasm (0.2+dfsg-2)
- ultrafast de novo assembler for long noisy DNA sequencing reads
- minimap (0.2-3)
- tool for approximate mapping of long biosequences such as DNA reads
- minisat (1:2.2.1-5build1)
- Fast and lightweight SAT solver
- minisat+ (1.0-4)
- solver for pseudo-Boolean constraints
- minisat2 (1:2.2.1-5build1)
- Transitional package for minisat
- minisat2
- virtuellt paket som tillhandahålls av minisat
- mipe (1.1-6)
- Tools to store PCR-derived data
- mira-assembler (4.9.6-3build2)
- Whole Genome Shotgun and EST Sequence Assembler
- mira-rfam-12s-rrna (4.9.6-3build2)
- extract of RFAM 12 rRNA database
- missfits (2.8.0-1build1)
- Basic maintenance and packaging tasks on FITS files
- mlpack-bin (2.2.5-1build1)
- intuitive, fast, scalable C++ machine learning library (binaries)
- mlv-smile (1.47-5)
- Find statistically significant patterns in sequences
- mmass (5.5.0-5)
- Mass spectrometry tool for proteomics
- mmass-modules (5.5.0-5)
- Mass spectrometry tool for proteomics - extension modules
- mobyle (1.5.5+dfsg-5)
- Web portal that provides web forms for command-line software
- mobyle-programs (5.1.2-2)
- program descriptions for the mobyle portal
- mobyle-tutorials (1.5.0-3)
- program tutorials for the mobyle portal
- mobyle-utils (1.5.5+dfsg-5)
- binary tools used by Mobyle
- mocassin (2.02.72-2build1)
- MOnte CArlo SimulationS of Ionised Nebulae
- mocassin-benchmarks (2.02.72-2build1)
- benchmarks for the photoionisation code MOCASSIN
- mocassin-data (2.02.72-2build1)
- atomic and optical data for the photoionisation code MOCASSIN
- mocassin-examples (2.02.72-2build1)
- Examples for the photoionisation code MOCASSIN
- molds (0.3.1-1build8)
- Semi-empirical electronic structure and molecular dynamics
- montage (5.0+dfsg-1)
- Toolkit for assembling FITS images into mosaics
- montage-gridtools (5.0+dfsg-1)
- Create files to run montage on the grid
- montecarlo-base (20061220+dfsg3-3.1build1)
- [Physics] Common files for CERNLIB Monte Carlo libraries
- montecarlo-data (20061220+dfsg3-3.1build1)
- [Physics] data for CERNLIB Monte Carlo libraries
- mopac7-bin (1.15-6ubuntu2)
- Semi-empirical Quantum Chemistry Library (binaries)
- morse-simulator (1.4-2ubuntu1)
- Multi-OpenRobot Simulation Engine
- morse-simulator-data (1.4-2ubuntu1)
- Multi-OpenRobot Simulation Engine
- mothur (1.39.5-2build1)
- sequence analysis suite for research on microbiota
- mothur-mpi (1.39.5-2build1)
- mpi-enabled binary for mothur
- mpb (1.5-3)
- MIT Photonic-Bands
- mpb-mpi (1.5-3)
- MIT Photonic-Bands, parallel (mpich) version
- mpb-scm (1.5-3)
- MIT Photonic-Bands initialisation files
- mpi-testsuite (3.2+dfsg-1build1)
- MPI testsuite results
- mpqc (2.3.1-18build1)
- Massively Parallel Quantum Chemistry Program
- mpqc-openmpi (2.3.1-18build1)
- Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
- mpqc-support (2.3.1-18build1)
- Massively Parallel Quantum Chemistry Program (support tools)
- mpqc3 (0.0~git20170114-4ubuntu1)
- Massively Parallel Quantum Chemistry Program
- mpqc3-data (0.0~git20170114-4ubuntu1)
- Massively Parallel Quantum Chemistry Program (data files)
- mptp (0.2.2-2)
- single-locus species delimitation
- mrbayes-mpi (3.2.6+dfsg-2)
- Bayesian Inference of Phylogeny - mpi version
- mriconvert (1:2.1.0-2)
- medical image file conversion utility
- mricron (0.20140804.1~dfsg.1-2)
- magnetic resonance image conversion, viewing and analysis
- mricron-data (0.20140804.1~dfsg.1-2)
- data files for MRIcron
- mrpt-apps (1:1.5.5-1)
- Mobile Robot Programming Toolkit - Console and GUI applications
- mrpt-common (1:1.5.5-1)
- Mobile Robot Programming Toolkit - Example datasets and files
- mrs (6.0.5+dfsg-3ubuntu1)
- Information Retrieval System for Biomedical databanks
- mrtrix (0.2.12-2.1)
- diffusion-weighted MRI white matter tractography
- mseed2sac (2.2+ds1-3)
- Convert MiniSEED time series data to SAC
- msxpertsuite (4.1.0-1)
- mass spectrometry software suite - executable files
- msxpertsuite-data (4.1.0-1)
- mass spectrometry software suite - arch-indep data
- mummer (3.23+dfsg-3)
- Efficient sequence alignment of full genomes
- munipack (0.5.10-1)
- Astronomical photometry software package
- munipack-cli (0.5.10-1)
- Command line interface of Munipack
- munipack-core (0.5.10-1)
- Core routines of Munipack
- munipack-gui (0.5.10-1)
- Graphical user interface of Munipack
- murasaki (1.68.6-6build5)
- homology detection tool across multiple large genomes
- murasaki-common (1.68.6-6build5)
- homology detection tool across multiple large genomes (common files)
- murasaki-mpi (1.68.6-6build5)
- homology detection tool across multiple large genomes (MPI-version)
- muscle (1:3.8.31+dfsg-3)
- Multiple alignment program of protein sequences
- music-bin (1.0.7-4)
- Multi-Simulation Coordinator for MPI -- Utilities
- mustang (3.2.3-1ubuntu1)
- multiple structural alignment of proteins
- mustang-testdata (3.2.3-1ubuntu1)
- multiple structural alignment of proteins, test data
- nanook (1.26+dfsg-1)
- pre- and post-alignment analysis of nanopore sequencing data
- nanopolish (0.9.0-1)
- consensus caller for nanopore sequencing data
- nast-ier (20101212+dfsg1-1build1)
- NAST-based DNA alignment tool
- nautic (1.5-4)
- computation of observer position in astro-navigation
- ncbi-blast+ (2.6.0-1)
- next generation suite of BLAST sequence search tools
- ncbi-blast+-legacy (2.6.0-1)
- NCBI Blast legacy call script
- ncbi-entrez-direct (7.40.20170928+ds-1)
- NCBI Entrez utilities on the command line
- ncbi-epcr (2.3.12-1-5)
- Tool to test a DNA sequence for the presence of sequence tagged sites
- ncbi-rrna-data (6.1.20170106-2)
- large rRNA BLAST databases distributed with the NCBI toolkit
- ncbi-seg (0.0.20000620-4)
- tool to mask segments of low compositional complexity in amino acid sequences
- ncbi-tools-bin (6.1.20170106-2)
- NCBI libraries for biology applications (text-based utilities)
- ncbi-tools-x11 (6.1.20170106-2)
- NCBI libraries for biology applications (X-based utilities)
- ncl-ncarg (6.4.0-9)
- NCAR Command Language and NCAR graphics
- ncl-tools (2.1.18+dfsg-2build1)
- tools to deal with NEXUS files
- ncoils (2002-5)
- coiled coil secondary structure prediction
- ncview (2.1.8+ds-1build1)
- X11 visual browser for NetCDF format files
- neat (2.0-2build1)
- Nebular Empirical Analysis Tool
- neobio (0.0.20030929-3)
- computes alignments of amino acid and nucleotide sequences
- netcdf-bin (1:4.6.0-2build1)
- Programs for reading and writing NetCDF files
- neurodebian (0.37.6)
- neuroscience-oriented distribution - repository configuration
- neurodebian-archive-keyring (0.37.6)
- neuroscience-oriented distribution - GnuPG archive keys
- neurodebian-desktop (0.37.6)
- neuroscience-oriented distribution - desktop integration
- neurodebian-dev (0.37.6)
- neuroscience-oriented distribution - development tools
- neurodebian-popularity-contest (0.37.6)
- neuroscience-oriented distribution - popcon integration
- neuron (7.5-1)
- Simulation environment for computational models of neurons
- neuron-dev (7.5-1)
- Neuron simulation environment - Development files
- nexus-tools (4.3.2-svn1921-6)
- NeXus scientific data file format - applications
- nifti2dicom (0.4.11-1ubuntu8)
- convert 3D medical images to DICOM 2D series
- nifti2dicom-data (0.4.11-1ubuntu8)
- data files for nifti2dicom
- njplot (2.4-7)
- phylogenetic tree drawing program
- node-mgrs (0.0.3-3)
- Utility for converting between WGS84 lat/lng and MGRS coordinates
- node-proj4 (2.3.17+ds-1)
- Node.js module to transform point coordinates systems
- node-sphericalmercator (1.0.1-2)
- Spherical Mercator projection support for NodeJS
- node-srs (0.4.8+dfsg-3ubuntu1)
- spatial reference library for Node.js
- norsnet (1.0.17-3)
- tool to identify unstructured loops in proteins
- norsp (1.0.6-3)
- predictor of non-regular secondary structure
- numdiff (5.9.0-1)
- Compare similar files with numeric fields
- nutsqlite (1.9.9.6-1)
- Dietary nutrition analysis software
- nwchem (6.6+r27746-4build1)
- High-performance computational chemistry software
- nwchem-data (6.6+r27746-4build1)
- High-performance computational chemistry software (data files)
- oar-common (2.5.7-3)
- OAR batch scheduler common package
- oar-node (2.5.7-3)
- OAR batch scheduler node package
- oar-restful-api (2.5.7-3)
- OAR web services
- oar-server (2.5.7-3)
- OAR batch scheduler server package
- oar-server-mysql (2.5.7-3)
- OAR batch scheduler MySQL server backend package
- oar-server-pgsql (2.5.7-3)
- OAR batch scheduler PostgreSQL server backend package
- oar-user (2.5.7-3)
- OAR batch scheduler user package
- oar-user-mysql (2.5.7-3)
- OAR batch scheduler MySQL user backend package
- oar-user-pgsql (2.5.7-3)
- OAR batch scheduler PostgreSQL user backend package
- oar-web-status (2.5.7-3)
- OAR batch scheduler visualization tool package
- obdgpslogger (0.16-1.3build1)
- suite of tools to log OBDII and GPS data
- objcryst-fox (1.9.6.0-2.1build1)
- Free Objects for Xtallography
- oce-draw (0.18.2-2build1)
- OpenCASCADE Community Edition CAE platform shared library
- octave-bart (0.4.02-2)
- Octave bindings for BART
- octave-biosig (1.3.0-2.2build1)
- Octave bindings for BioSig library
- octave-gdf (0.1.2-2.1)
- IO library for the GDF -- Octave interface
- octave-lhapdf (5.9.1-6)
- Octave Bindings for LHAPDF
- octave-psychtoolbox-3 (3.0.14.20170103+git6-g605ff5c.dfsg1-1build1)
- toolbox for vision research -- Octave bindings
- octomap-tools (1.8.1+dfsg-1)
- Tools for 3D occupancy grid mapping
- octovis (1.8.1+dfsg-1)
- Visualization tool for OctoMap
- odil (0.8.0-4build1)
- C++11 library for the DICOM standard (application)
- ogdi-bin (3.2.0+ds-2)
- Open Geographic Datastore Interface Library -- utilities
- ompl-demos (1.2.1+ds1-1build1)
- Open Motion Planning Library (OMPL) demos
- openbabel (2.3.2+dfsg-3build1)
- Chemical toolbox utilities (cli)
- openbabel-gui (2.3.2+dfsg-3build1)
- Chemical toolbox utilities (graphical user interface)
- opencaster (3.2.2+dfsg-1.1build1)
- MPEG2 transport stream data generator and packet manipulator
- openfoam (4.1+dfsg1-2)
- Set of programs for Computational Fluid Dynamics (CFD). Binaries
- openfoam-examples (4.1+dfsg1-2)
- Set of programs for Computational Fluid Dynamics (CFD). Examples
- openmolar (1.0.15-gd81f9e5-1)
- dental practice management software
- openmx (3.7.6-2)
- package for nano-scale material simulations
- openmx-data (3.7.6-2)
- package for nano-scale material simulations (data)
- openrocket (15.03)
- Model Rocket Simulator
- openturns-examples (1.9-5)
- examples of OpenTURNS functionalities
- openturns-validation (1.9-5)
- validation files for OpenTURNS
- openuniverse (1.0beta3.1+dfsg-6)
- 3D Universe Simulator
- openuniverse-common (1.0beta3.1+dfsg-6)
- 3D Universe Simulator data files
- optgeo (2.25-1)
- simulator for geometrical optics
- opticalraytracer (3.2-1.1ubuntu1)
- Virtual lens design workshop
- orthanc (1.3.1+dfsg-1build2)
- Lightweight, RESTful DICOM server for medical imaging
- orthanc-dicomweb (0.4+dfsg-1build1)
- Plugin to extend Orthanc with support of WADO and DICOMweb
- orthanc-imagej (1.1+dfsg-2)
- ImageJ plugin to import images from Orthanc
- orthanc-postgresql (2.0-5)
- Plugins to use PostgreSQL as a database back-end to Orthanc
- orthanc-webviewer (2.3-2)
- Web viewer of medical images for Orthanc
- orthanc-wsi (0.4+dfsg-4build1)
- Whole-slide imaging support for Orthanc (digital pathology)
- ossim-core (2.2.2-1)
- OSSIM core utilities
- otb-bin (6.4.0+dfsg-1)
- ORFEO Toolbox command line applications
- otb-bin-qt (6.4.0+dfsg-1)
- ORFEO Toolbox graphical user interface applications
- otb-testdriver (6.4.0+dfsg-1)
- ORFEO Toolbox library - OTBTestDriver
- otf-trace (1.12.5+dfsg-2build1)
- Open Trace Format support library - development files
- ovito (2.9.0+dfsg1-5ubuntu2)
- visualization and analysis tool for atomistic simulation data
- p4vasp (0.3.30+dfsg-3)
- visualization suite for the Vienna Ab-initio Simulation Package (VASP)
- paje.app (1.98-1build5)
- generic visualization tool (Gantt chart and more)
- paleomix (1.2.12-1)
- pipelines and tools for the processing of ancient and modern HTS data
- paraclu (9-1build1)
- Parametric clustering of genomic and transcriptomic features
- parafly (0.0.2013.01.21-3build1)
- parallel command processing using OpenMP
- paraview (5.4.1+dfsg3-1)
- Parallel Visualization Application
- parsinsert (1.04-3)
- Parsimonious Insertion of unclassified sequences into phylogenetic trees
- parsinsert-testdata (1.04-3)
- Test data for parsinsert
- parsnp (1.2+dfsg-3)
- rapid core genome multi-alignment
- patman (1.2.2+dfsg-4)
- rapid alignment of short sequences to large databases
- paw (1:2.14.04.dfsg.2-9.1build1)
- Physics Analysis Workstation - a graphical analysis program
- paw++ (1:2.14.04.dfsg.2-9.1build1)
- Physics Analysis Workstation (Lesstif-enhanced version)
- paw-common (1:2.14.04.dfsg.2-9.1build1)
- Physics Analysis Workstation (common files)
- paw-demos (1:2.14.04.dfsg.2-9.1build1)
- Physics Analysis Workstation examples and tests
- pbbamtools (0.7.4+ds-1build2)
- processing Pacific Biosciences binary alignment/map files
- pbbarcode (0.8.0-4ubuntu1)
- annotate PacBio sequencing reads with barcode information
- pbdagcon (0.3+20161121+ds-1)
- sequence consensus using directed acyclic graphs
- pbgenomicconsensus (2.1.0-1)
- Pacific Biosciences variant and consensus caller
- pbh5tools (0.8.0+dfsg-5build1)
- tools for manipulating Pacific Biosciences HDF5 files
- pbhoney (15.8.24+dfsg-2)
- genomic structural variation discovery
- pbjelly (15.8.24+dfsg-2)
- genome assembly upgrading tool
- pbsim (1.0.3-3)
- simulator for PacBio sequencing reads
- pdb2pqr (2.1.1+dfsg-2)
- Preparation of protein structures for electrostatics calculations
- pegasus-wms (4.4.0+dfsg-7)
- Scientific workflow management system for HTCondor
- perlprimer (1.2.3-1)
- Graphical design of primers for PCR
- perlprimer-doc (1.2.3-1)
- Tutorial to perlprimer
- perm (0.4.0-3)
- efficient mapping of short reads with periodic spaced seeds
- pftools (3+dfsg-2build1)
- build and search protein and DNA generalized profiles
- phast (1.4+dfsg-1)
- phylogenetic analysis with space/time models
- phipack (0.0.20160614-2)
- PHI test and other tests of recombination
- phybin (0.3-1)
- binning/clustering newick trees by topology
- phylip (1:3.696+dfsg-5)
- package of programs for inferring phylogenies
- phylip-doc (1:3.696+dfsg-5)
- package of programs for inferring phylogenies (documentation)
- phyml (3:3.3.20170530+dfsg-2)
- Phylogenetic estimation using Maximum Likelihood
- physamp (1.1.0-1)
- sample sequence alignment corresponding to phylogeny
- phyutility (2.7.3-1)
- simple analyses or modifications on both phylogenetic trees and data matrices
- picard-tools (2.8.1+dfsg-3)
- Command line tools to manipulate SAM and BAM files
- picosat (960-1build1)
- SAT solver with proof and core support
- piler (0~20140707-1build1)
- genomic repeat analysis
- pirs (2.0.2+dfsg-6)
- Profile based Illumina pair-end Reads Simulator
- pirs-examples (2.0.2+dfsg-6)
- profile basd Illumina pair-end Reads Simulator (example data)
- pirs-profiles (2.0.2+dfsg-6)
- profile basd Illumina pair-end Reads Simulator (profile data)
- pkg-r-autopkgtest (20180403)
- Script for the automatic testing of R packages
- pktools (2.6.7.3+ds-1)
- GDAL add-on tools to perform useful raster processing
- placnet (1.03-2)
- Plasmid Constellation Network project
- planets (0.1.13-18)
- Gravitation simulation of planetary bodies
- plast (2.3.1+dfsg-4)
- Parallel Local Sequence Alignment Search Tool
- plast-example (2.3.1+dfsg-4)
- Parallel Local Sequence Alignment Search Tool (example data)
- plastimatch (1.7.0+dfsg.1-1)
- medical image reconstruction and registration
- plink (1.07+dfsg-1)
- whole-genome association analysis toolset
- plink1.9 (1.90~b5.2-180109-1)
- whole-genome association analysis toolset
- pnetcdf-bin (1.9.0-2)
- Programs for reading and writing parallel NetCDF files
- poa (2.0+20060928-6)
- Partial Order Alignment for multiple sequence alignment
- populations (1.2.33+svn0120106+dfsg-1)
- population genetic software
- poretools (0.6.0+dfsg-2)
- toolkit for nanopore nucleotide sequencing data
- poretools-data (0.6.0+dfsg-2)
- toolkit for nanopore nucleotide sequencing data -- sample datasets
- pp-popularity-contest (1.0.6-3)
- PredictProtein popularity contest
- pprepair (0.0~20170614-dd91a21-1build4)
- planar partition repair tool
- praat (6.0.37-2)
- program for speech analysis and synthesis
- prank (0.0.170427+dfsg-1)
- Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
- predictnls (1.0.20-4)
- prediction and analysis of protein nuclear localization signals
- predictprotein (1.1.07-3)
- suite of protein sequence analysis tools
- prepair (0.7.1-1build4)
- polygon repair tool
- prepair-data (0.7.1-1build4)
- polygon repair tool -- example data
- prime-phylo (1.0.11-4build2)
- bayesian estimation of gene trees taking the species tree into account
- primer3 (2.4.0-1ubuntu2)
- tool to design flanking oligo nucleotides for DNA amplification
- primer3-examples (2.4.0-1ubuntu2)
- tool to design flanking oligo nucleotides for DNA amplification (examples)
- proalign (0.603-3)
- Probabilistic multiple alignment program
- probabel (0.4.5-5)
- Toolset for Genome-Wide Association Analysis
- probabel-examples (0.4.5-5)
- Example files for ProbABEL
- probalign (1.4-7)
- multiple sequence alignment using partition function posterior probabilities
- probcons (1.12-11)
- PROBabilistic CONSistency-based multiple sequence alignment
- (1.12-11)
- Extra programs from the probcons package
- proda (1.0-11)
- multiple alignment of protein sequences
- prodigal (1:2.6.3-1)
- Microbial (bacterial and archaeal) gene finding program
- profbval (1.0.22-5)
- predictor of flexible/rigid protein residues from sequence
- profisis (1.0.11-4)
- prediction of protein-protein interaction sites from sequence
- profnet-bval (1.0.22-5)
- neural network architecture for profbval
- profnet-chop (1.0.22-5)
- neural network architecture for profchop
- profnet-con (1.0.22-5)
- neural network architecture for profcon
- profnet-isis (1.0.22-5)
- neural network architecture for profisis
- profnet-md (1.0.22-5)
- neural network architecture for metadisorder
- profnet-norsnet (1.0.22-5)
- neural network architecture for norsnet
- profnet-prof (1.0.22-5)
- neural network architecture for profacc
- profnet-snapfun (1.0.22-5)
- neural network architecture for snapfun
- profphd (1.0.42-2)
- secondary structure and solvent accessibility predictor
- profphd-net (1.0.22-5)
- neural network architecture for profphd
- profphd-utils (1.0.10-4)
- profphd helper utilities convert_seq and filter_hssp
- proftmb (1.1.12-7)
- per-residue prediction of bacterial transmembrane beta barrels
- progressivemauve (1.2.0+4713+dfsg-1)
- multiple genome alignment algorithms
- proj-bin (4.9.3-2)
- Cartographic projection library (tools)
- prooftree (0.13-1build3)
- proof-tree visualization for Proof General
- proteinortho (5.16+dfsg-1)
- Detection of (Co-)orthologs in large-scale protein analysis
- prottest (3.4.2+dfsg-2)
- selection of best-fit models of protein evolution
- psfex (3.17.1+dfsg-4)
- Point Spread Function model extractor
- psi3 (3.4.0-6build2)
- Quantum Chemical Program Suite
- psi4 (1:1.1-5)
- Quantum Chemical Program Suite
- psi4-data (1:1.1-5)
- Quantum Chemical Program Suite (data files)
- psortb (3.0.5+dfsg-1ubuntu1)
- bacterial localization prediction tool
- psychopy (1.85.3.dfsg-1build1)
- environment for creating psychology stimuli in Python
- psychtoolbox-3-common (3.0.14.20170103+git6-g605ff5c.dfsg1-1build1)
- toolbox for vision research -- arch/interpreter independent part
- psychtoolbox-3-lib (3.0.14.20170103+git6-g605ff5c.dfsg1-1build1)
- toolbox for vision research -- arch-specific parts
- purify (2.0.0-2)
- Collection of routines for radio interferometric imaging
- pyfai (0.15.0+dfsg1-1)
- Fast Azimuthal Integration scripts
- pyfr (1.5.0-1)
- flux reconstruction in Python
- pylang (0.0.4-0ubuntu3)
- complete right sentence with random words generated.
- pymca (5.2.2+dfsg-2)
- Applications and toolkit for X-ray fluorescence analysis -- scripts
- pymca-data (5.2.2+dfsg-2)
- Architecture independent data files for PyMca
- pymoctool (0.5.0-2ubuntu2)
- Python Multi-Order Coverage maps tool for Virtual Observatory
- pymol (1.8.4.0+dfsg-1build1)
- Molecular Graphics System
- pymol-data (1.8.4.0+dfsg-1build1)
- data files for PyMOL
- pythia8-data (8.1.86-1.2)
- PYTHIA8 data files
- python-drizzle-testdata (1.11-1)
- Dithered image combination for Python (Test data)
- python-escript (5.1-5)
- Escript/Finley finite elements Python2 system (with OpenMP)
- python-escript-doc (5.1-5)
- Documentation for Escript/Finley
- python-escript-mpi (5.1-5)
- Escript/Finley finite elements Python2 system (OpenMP + MPI)
- python-expyriment (0.7.0+git34-g55a4e7e-3.3)
- Python library for cognitive and neuroscientific experiments
- python-nifti (0.20100607.1-4.1)
- Python interface to the NIfTI I/O libraries
- python-pybigwig (0.3.2-1ubuntu5)
- Python 2 module for quick access to bigBed and bigWig files
- python-pynlpl (1.1.2-1)
- PyNLPl is a library for Natural Language Processing (Python 2 version)
- python-pyode (1.2.0-4+cvs20090320.2)
- Python bindings for The Open Dynamics Engine
- python-saga (2.3.1+dfsg-3build7)
- SAGA GIS Python bindings
- python3-amp (0.6-3)
- Atomistic Machine-learning Package (python 3)
- python3-escript (5.1-5)
- Escript/Finley finite elements Python3 system (with OpenMP)
- python3-escript-mpi (5.1-5)
- Escript/Finley finite elements Python3 system (OpenMP + MPI)
- python3-gfapy (1.0.0+dfsg-2)
- flexible and extensible software library for handling sequence graphs
- python3-morse-simulator (1.4-2ubuntu1)
- Multi-OpenRobot Simulation Engine
- python3-pybigwig (0.3.2-1ubuntu5)
- Python 3 module for quick access to bigBed and bigWig files
- python3-pynlpl (1.1.2-1)
- PyNLPl is a library for Natural Language Processing (Python 3 version)
- pyzo (4.4.3-1)
- interactive editor for scientific Python
- qcumber (1.0.14+dfsg-1)
- quality control of genomic sequences
- qfits-tools (6.2.0-8ubuntu2)
- FITS manipulation tools
- qfitsview (3.3+p1+dfsg-2build1)
- FITS file viewer based on DPUSER
- qgis (2.18.17+dfsg-1)
- Geographic Information System (GIS)
- qgis-api-doc (2.18.17+dfsg-1)
- QGIS API documentation
- qgis-common (2.18.17+dfsg-1)
- QGIS - architecture-independent data
- qgis-plugin-grass (2.18.17+dfsg-1)
- GRASS plugin for QGIS
- qgis-plugin-grass-common (2.18.17+dfsg-1)
- GRASS plugin for QGIS - architecture-independent data
- qgis-provider-grass (2.18.17+dfsg-1)
- GRASS provider for QGIS
- qgis-providers (2.18.17+dfsg-1)
- collection of data providers to QGIS
- qgis-providers-common (2.18.17+dfsg-1)
- collection of data providers to QGIS - architecture-independent files
- qgis-server (2.18.17+dfsg-1)
- QGIS server providing various OGC services
- qiime (1.8.0+dfsg-4ubuntu1)
- Quantitative Insights Into Microbial Ecology
- qiime-data (1.8.0+dfsg-4ubuntu1)
- Quantitative Insights Into Microbial Ecology (supporting data)
- qmapshack (1.10.0-1)
- GPS mapping (GeoTiff and vector) and GPSr management
- qmc (0.94-3.1)
- Quine McClusky Simplification Tool
- qnifti2dicom (0.4.11-1ubuntu8)
- convert 3D medical images to DICOM 2D series (gui)
- qrisk2 (0.1.20150729-2)
- cardiovascular disease risk calculator
- qthid-fcd-controller (4.1-3build1)
- Funcube Dongle controller
- qtltools (1.1+dfsg-2build1)
- Tool set for molecular QTL discovery and analysis
- quantum-espresso (6.0-3.1)
- Electronic-Structure and Ab-Initio Molecular Dynamics Suite
- quantum-espresso-data (6.0-3.1)
- Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
- quorum (1.1.1-1)
- QUality Optimized Reads of genomic sequences
- qutemol (0.4.1~cvs20081111-9)
- interactive visualization of macromolecules
- r-cran-colorspace (1.3-2-2)
- GNU R Color Space Manipulation
- r-cran-epibasix (1.3-3)
- GNU R Elementary Epidemiological Functions
- r-cran-genetics (1.3.8.1-2)
- GNU R package for population genetics
- r-cran-haplo.stats (1.7.7-2)
- GNU R package for haplotype analysis
- r-cran-msm (1.6.5-1)
- GNU R Multi-state Markov and hidden Markov models in continuous time
- r-cran-randomforest (4.6-12-2)
- GNU R package implementing the random forest classificator
- r-cran-sp (1:1.2-5-3)
- GNU R classes and methods for spatial data
- r-cran-spc (1:0.5.4-1)
- GNU R Statistical Process Control
- r-cran-vcd (1:1.4-3-3)
- GNU R Visualizing Categorical Data
- r-cran-xtable (1:1.8-2-2)
- GNU R coerce data to LaTeX and HTML tables
- radiant (2.7+dfsg-1)
- explore hierarchical metagenomic data with zoomable pie charts
- rambo-k (1.21+dfsg-1)
- Read Assignment Method Based On K-mers
- rapmap (0.5.0+dfsg-3)
- rapid sensitive and accurate DNA read mapping via quasi-mapping
- rapmap-example-data (0.5.0+dfsg-3)
- example data for rapmap - rapid sensitive and accurate DNA read mapping
- rasmol (2.7.5.2-2)
- Visualize biological macromolecules
- rasmol-doc (2.7.5.2-2)
- Documentation for rasmol
- rate4site (3.0.0-5)
- detector of conserved amino-acid sites
- rawtran (0.3.8-2build2)
- RAW photo to FITS converter
- raxml (8.2.11+dfsg-1)
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
- ray (2.3.1-5)
- de novo genome assemblies of next-gen sequencing data
- (2.3.1-5)
- Scripts and XSL sheets for post-processing for ray
- rdkit-data (201603.5+dfsg-1ubuntu1)
- Collection of cheminformatics and machine-learning software (data files)
- rdp-classifier (2.10.2-2)
- extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
- readseq (1-12)
- Conversion between sequence formats
- reapr (1.0.18+dfsg-3)
- universal tool for genome assembly evaluation
- relion-bin (1.4+dfsg-3ubuntu1)
- toolkit for 3D reconstructions in cryo-electron microscopy
- relion-bin+gui (1.4+dfsg-3ubuntu1)
- parallel toolkit for 3D reconstructions in cryo-electron microscopy
- relion-bin+mpi (1.4+dfsg-3ubuntu1)
- parallel toolkit for 3D reconstructions in cryo-electron microscopy
- relion-bin+mpi+gui (1.4+dfsg-3ubuntu1)
- parallel toolkit for 3D reconstructions in cryo-electron microscopy
- repeatmasker-recon (1.08-3)
- finds repeat families from biological sequences
- reprof (1.0.1-5)
- protein secondary structure and accessibility predictor
- rivet (1.8.3-2build1)
- Robust Independent Validation of Experiment and Theory
- rivet-plugins (1.8.3-2build1)
- Analysis plugins of Rivet
- rivet-plugins-data (1.8.3-2build1)
- Data files of Rivet analysis plugins
- rivet-plugins-dev (1.8.3-2build1)
- Template generator of Rivet analysis plugin
- rna-star (2.5.4b+dfsg-1)
- ultrafast universal RNA-seq aligner
- rnahybrid (2.1.2-4)
- Fast and effective prediction of microRNA/target duplexes
- roary (3.12.0+dfsg-1)
- high speed stand alone pan genome pipeline
- rocs (4:17.12.3-0ubuntu1)
- graph theory IDE
- roguenarok (1.0-1ubuntu1)
- versatile and scalable algorithm for rogue taxon identification
- rsem (1.2.31+dfsg-1)
- RNA-Seq by Expectation-Maximization
- rtax (0.984-5)
- Classification of sequence reads of 16S ribosomal RNA gene
- ruby-rgfa (1.3.1-1)
- parse, edit and write GFA format graphs in Ruby
- runcircos-gui (0.0+20160403-1)
- GUI tool to run circos
- sac2mseed (1.12+ds1-3)
- Convert SAC waveform data to MiniSEED
- saga (2.3.1+dfsg-3build7)
- System for Automated Geoscientific Analyses
- saga-common (2.3.1+dfsg-3build7)
- SAGA GIS architecture independent files
- saint (2.5.0+dfsg-2build1)
- Significance Analysis of INTeractome
- salmon (0.7.2+ds1-3)
- wicked-fast transcript quantification from RNA-seq data
- sambamba (0.6.7-2)
- tools for working with SAM/BAM data
- samtools (1.7-1)
- processing sequence alignments in SAM and BAM formats
- samtools-test (1.7-1)
- test files for the samtools package
- saods9 (7.5+repack1-2)
- Image display tool for astronomy
- saods9-tclpackages (7.5+repack1-2)
- Tcl/Tk packages provided with DS9
- sasview (4.2.0~git20171031-5)
- Small Angle Scattering Analysis suite
- sat4j (2.3.5-0.2)
- Efficient library of SAT solvers in Java
- savi (1.5.1-1)
- satellite constellation visualisation
- sbmltoolbox (4.1.0-3)
- libsbml toolbox for octave and matlab
- scamp (2.0.4+dfsg-1)
- Compute astrometric and photometric solutions
- science-distributedcomputing (1.7ubuntu3)
- Debian Science Distributed Computing packages
- science-electrophysiology (1.7ubuntu3)
- Debian Science packages for Electrophysiology
- science-highenergy-physics (1.7ubuntu3)
- Debian Science High Energy Physics packages
- science-highenergy-physics-dev (1.7ubuntu3)
- Debian Science High Energy Physics development packages
- science-machine-learning (1.7ubuntu3)
- Debian Science Machine Learning packages
- science-nanoscale-physics (1.7ubuntu3)
- Debian Science Nanoscale Physics packages
- science-nanoscale-physics-dev (1.7ubuntu3)
- Debian Science Nanoscale Physics development packages
- science-neuroscience-modeling (1.7ubuntu3)
- Debian Science packages for modeling of neural systems
- science-physics-dev (1.7ubuntu3)
- Debian Science Physics-dev packages
- science-psychophysics (1.7ubuntu3)
- Debian Science packages for Psychophysics
- science-simulations (1.7ubuntu3)
- Debian Science Simulation packages
- scram (0.16.2-1)
- Probabilistic Risk Analysis Tool
- scram-gui (0.16.2-1)
- SCRAM GUI front-end
- scrm (1.7.2-1)
- simulator of evolution of genetic sequences
- sctk (2.4.10-20151007-1312Z+dfsg2-3)
- speech recognition scoring toolkit
- scythe (0.994-4)
- Bayesian adaptor trimmer for sequencing reads
- sdrangelove (0.0.1.20150707-2build3)
- Osmocom Software Defined Radio
- seer (1.1.4-1build1)
- genomic sequence element (kmer) enrichment analysis
- segyio-bin (1.5.2-1)
- SEG-Y read/write library for seismic processing (shell utilities)
- seq-gen (1.3.4-1)
- simulate the evolution of nucleotide or amino acid sequences
- seqprep (1.3.2-2)
- stripping adaptors and/or merging paired reads of DNA sequences with overlap
- seqprep-data (1.3.2-2)
- example data set for seqprep - only used for testing
- seqsero (1.0-1)
- Salmonella serotyping from genome sequencing data
- seqtk (1.2-2)
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
- (2.19.5+dfsg-5)
- Source extractor for astronomical images
- sga (0.10.15-3)
- de novo genome assembler that uses string graphs
- shelxle (1.0.888-1)
- graphical user interface for SHELXL
- shogun-cmdline-static (3.2.0-7.5)
- Large Scale Machine Learning Toolbox
- sibsim4 (0.20-3)
- align expressed RNA sequences on a DNA template
- sickle (1.33-2)
- windowed adaptive trimming tool for FASTQ files using quality
- sigma-align (1.1.3-5)
- Simple greedy multiple alignment of non-coding DNA sequences
- sigviewer (0.5.1+svn556-5)
- GUI viewer for biosignals such as EEG, EMG, and ECG
- silx (0.6.1+dfsg-2)
- Toolbox for X-Ray data analysis - Executables
- sim4 (0.0.20121010-4)
- tool for aligning cDNA and genomic DNA
- sim4db (0~20150903+r2013-3)
- batch spliced alignment of cDNA sequences to a target genome
- simgrid-java (3.18+dfsg-1)
- Java bindings for the SimGrid Toolkit
- siril (0.9.8.3-1)
- astronomical image processing tool
- skycat (3.1.2+starlink1~b+dfsg-5)
- Image visualization and access to catalogs and data for astronomy
- slang-xfig (0.2.0~.117-2)
- produce plots and drawings through Xfig's fig2dev in S-Lang
- sleepyhead (1.0.0-beta-2+dfsg-4)
- Sleep tracking software with a focus on monitoring CPAP treatment
- smalr (1.0.1-1)
- interrogation of the methylation status of nucleotide sequencing reads
- smalt (0.7.6-7)
- Sequence Mapping and Alignment Tool
- smalt-examples (0.7.6-7)
- Sequence Mapping and Alignment Tool (examples)
- smithwaterman (0.0+20160702-3)
- determine similar regions between two strings or genomic sequences
- smrtanalysis (0~20161126)
- software suite for single molecule, real-time sequencing
- snakemake (4.3.1-1)
- pythonic workflow management system
- snap (2013-11-29-8)
- location of genes from DNA sequence with hidden markov model
- snap-aligner (1.0~beta.18+dfsg-2)
- Scalable Nucleotide Alignment Program
- sniffles (1.0.7+ds-1)
- structural variation caller using third-generation sequencing
- snp-sites (2.3.3-2)
- Binary code for the package snp-sites
- snpomatic (1.0-3)
- fast, stringent short-read mapping software
- soapdenovo (1.05-4)
- short-read assembly method to build de novo draft assembly
- soapdenovo2 (241+dfsg-1)
- short-read assembly method to build de novo draft assembly
- sortmerna (2.1-2)
- tool for filtering, mapping and OTU-picking NGS reads
- spaced (1.0.2+dfsg-1)
- alignment-free sequence comparison using spaced words
- spades (3.11.1+dfsg-1)
- genome assembler for single-cell and isolates data sets
- spass (3.7-4)
- automated theorem prover for first-order logic with equality
- spatialite-bin (4.3.0-2build1)
- Geospatial extension for SQLite - tools
- spd (1.3.0-1ubuntu2)
- Synchrotron image corrections and azimuthal integration
- splash (2.8.0-1)
- Visualisation tool for Smoothed Particle Hydrodynamics simulation
- sprai (0.9.9.23+dfsg-1)
- single-pass sequencing read accuracy improver
- squizz (0.99d+dfsg-1)
- Converter for genetic sequences and alignments
- sra-toolkit (2.8.2-5+dfsg-1)
- utilities for the NCBI Sequence Read Archive
- srst2 (0.2.0-5)
- Short Read Sequence Typing for Bacterial Pathogens
- ssake (4.0-1)
- genomics application for assembling millions of very short DNA sequences
- ssake-examples (4.0-1)
- example data for SSAKE, a genomic assembler of short reads
- sspace (2.1.1+dfsg-3)
- scaffolding pre-assembled contigs after extension
- ssw-align (1.1-1)
- Smith-Waterman aligner based on libssw
- stacks (2.0Beta8c+dfsg-1)
- pipeline for building loci from short-read DNA sequences
- stacks-web (2.0Beta8c+dfsg-1)
- web interface for displaying loci from short-read sequences
- staden (2.0.0+b11-2)
- DNA sequence assembly (Gap4/Gap5), editing and analysis tools
- staden-common (2.0.0+b11-2)
- Architecture independent files for Staden
- staden-io-lib-examples (1.14.9-4)
- programs for maniuplating DNA sequencing files (usage examples)
- staden-io-lib-utils (1.14.9-4)
- programs for maniuplating DNA sequencing files
- stardata-common (0.8build1)
- Common framework to manage astronomy packages
- starplot (0.95.5-8.3)
- 3-dimensional perspective star map viewer
- starpu-examples (1.2.3+dfsg-4)
- Task scheduler for heterogeneous multicore machines - exs
- stellarium (0.18.0-1)
- real-time photo-realistic sky generator
- stellarium-data (0.18.0-1)
- Stellarium data files
- stiff (2.4.0-2build1)
- convert scientific FITS images to the TIFF format
- stilts (3.1.2-2)
- Starlink Tables Infrastructure Library Tool Set
- stimfit (0.15.4-1)
- Program for viewing and analyzing electrophysiological data
- subread (1.6.0+dfsg-1)
- toolkit for processing next-gen sequencing data
- subread-data (1.6.0+dfsg-1)
- data files for subread package
- suitename (0.3.070628-1build1)
- categorize each suite in an RNA backbone
- sumaclust (1.0.31-1)
- fast and exact clustering of genomic sequences
- sumatra (1.0.31-1)
- fast and exact comparison and clustering of sequences
- sumo (0.32.0+dfsg1-1)
- Simulation of Urban MObility (SUMO)
- surankco (0.0.r5+dfsg-1)
- Supervised Ranking of Contigs in de novo Assemblies
- survex (1.2.33-1)
- cave surveying and mapping software
- survex-aven (1.2.33-1)
- sophisticated cave survey viewer for Survex
- swarm (2.2.2+dfsg-1)
- robust and fast clustering method for amplicon-based studies
- swarp (2.38.0+dfsg-3build1)
- Resample and co-add together FITS images
- swarp
- virtuellt paket som tillhandahålls av suckless-tools
- swe-basic-data (1.80.00.0002-1ubuntu2)
- basic data files for the libswe package
- swe-standard-data (00004-1)
- standard data for the Swiss Ephemeris
- synphot-data (0.9.8.8+dfsg-1)
- Optional data files for pysynphot
- syrthes (4.3.0-dfsg1-2build1)
- Transient thermal simulations in complex solid geometries
- syrthes-gui (4.3.0-dfsg1-2build1)
- Transient thermal simulations in complex solid geometries - GUI
- syrthes-tests (4.3.0-dfsg1-2build1)
- Test cases for SYRTHES
- syrthes-tools (4.3.0-dfsg1-2build1)
- Transient thermal simulations in complex solid geometries - tools
- t-coffee (11.00.8cbe486-6)
- Multiple Sequence Alignment
- t-coffee-examples (11.00.8cbe486-6)
- annotated examples for the use of T-Coffee
- tabix (1.7-2)
- generic indexer for TAB-delimited genome position files
- tandem-mass (1:20170201.1-1)
- mass spectrometry software for protein identification
- tantan (13-4)
- low complexity and tandem repeat masker for biosequences
- tcd-utils (20061127-2build1)
- convert Tide Constituent Database (TCD) files
- tcl-fitstcl (2.4-3build1)
- Tcl interface to FITS files
- terraintool (1.13-2)
- Generates survex format terrain models from SRTM and ASTER data
- tessa (0.3.1-6.2)
- simulation of 3D optical systems with the FDTD method
- tessa-mpi (0.3.1-6.2)
- simulation of 3D optical systems using FDTD on MPI clusters
- thepeg (1.8.0-3build1)
- Toolkit for High Energy Physics Event Generation
- thepeg-gui (1.8.0-3build1)
- Java GUI of ThePEG
- thepeg-reference (1.8.0-3build1)
- Code reference of ThePEG
- therion (5.4.1ds1-2)
- Cave surveying - 2D and 3D drawing software
- therion-doc (5.4.1ds1-2)
- Documentation for Therion Cave surveying software
- therion-viewer (5.4.1ds1-2)
- Cave surveying - 3D viewer for therion models
- theseus (3.3.0-6)
- superimpose macromolecules using maximum likelihood
- theseus-examples (3.3.0-6)
- superimpose macromolecules using maximum likelihood (examples)
- tigr-glimmer (3.02b-1)
- Gene detection in archea and bacteria
- timbl (6.4.8-1)
- Tilburg Memory Based Learner
- timblserver (1.11-1)
- Server extensions for Timbl
- tksao (7.5+repack1-2)
- Tk widgets for astronomical imaging and data visualization
- tm-align (20170708+dfsg-1)
- structural alignment of proteins
- tnseq-transit (2.1.1-1)
- statistical calculations of essentiality of genes or genomic regions
- topcat (4.5.1-2)
- Tool for OPerations on Catalogues And Tables
- tophat (2.1.1+dfsg1-1)
- fast splice junction mapper for RNA-Seq reads
- toppred (1.10-4)
- transmembrane topology prediction
- toulbar2 (0.9.8-1)
- Exact combinatorial optimization for Graphical Models
- transcalc (0.14-6)
- microwave and RF transmission line calculator
- transdecoder (5.0.1-1)
- find coding regions within RNA transcript sequences
- transrate-tools (1.0.0-1build1)
- helper for transrate
- transtermhp (2.09-3)
- find rho-independent transcription terminators in bacterial genomes
- travis (170812-1)
- trajectory analyzer and visualizer
- tree-ppuzzle (5.2-10)
- Parallelized reconstruction of phylogenetic trees by maximum likelihood
- tree-puzzle (5.2-10)
- Reconstruction of phylogenetic trees by maximum likelihood
- tree-puzzle-doc (5.2-10)
- Reconstruction of phylogenetic trees by maximum likelihood (doc)
- treeviewx (0.5.1+20100823-5)
- Displays and prints phylogenetic trees
- trimmomatic (0.36+dfsg-3)
- flexible read trimming tool for Illumina NGS data
- trinityrnaseq (2.5.1+dfsg-2)
- RNA-Seq De novo Assembly
- trinityrnaseq-examples (2.5.1+dfsg-2)
- RNA-Seq De novo Assembly common example and testing files
- tunnelx (20170928-1)
- Cave Survey drawing software
- ubertooth (2017.03.R2-2)
- 2.4 GHz wireless development platform for Bluetooth experimentation
- ubertooth-firmware (2017.03.R2-2)
- Firmware for Ubertooth
- ubertooth-firmware-source (2017.03.R2-2)
- Source code for the Ubertooth firmware
- uc-echo (1.12-9build1)
- error correction algorithm designed for short-reads from NGS
- ucto (0.9.6-1build2)
- Unicode Tokenizer
- uctodata (0.4-1)
- Data files for Ucto
- ugene (1.25.0+dfsg-1)
- integrated bioinformatics toolkit
- ugene-data (1.25.0+dfsg-1)
- required data for UGENE - integrated bioinformatics toolkit
- uhd-host (3.10.3.0-2)
- universal hardware driver for Ettus Research products - host apps
- units-filter (3.7-3build1)
- Parser for expressions concerning physical values
- v-sim (3.7.2-5)
- Visualize atomic structures
- v-sim-common (3.7.2-5)
- Visualize atomic structures (support files)
- v-sim-plugins (3.7.2-5)
- Plugins for V_Sim (a 3D visualization package)
- varna (3-93+ds-1)
- Visualization Applet for RNA
- vcftools (0.1.15-1)
- Collection of tools to work with VCF files
- velvet (1.2.10+dfsg1-3build1)
- Nucleic acid sequence assembler for very short reads
- velvet-example (1.2.10+dfsg1-3build1)
- Example data for the Velvet sequence assembler
- velvet-long (1.2.10+dfsg1-3build1)
- Nucleic acid sequence assembler for very short reads, long version
- velvet-tests (1.2.10+dfsg1-3build1)
- Test data for the Velvet sequence assembler
- velvetoptimiser (2.2.6-1)
- automatically optimise Velvet do novo assembly parameters
- veusz (1.21.1-1.3)
- 2D scientific plotting application with graphical interface
- veusz-helpers (1.21.1-1.3)
- Architecture-specific helper module for Veusz
- viewmol (2.4.1-24)
- graphical front end for computational chemistry programs
- visp-images-data (3.1.0-1)
- visual servoing library - dataset reference files
- vistrails (2.2.4-1build1)
- Science visualisation workflow toolkit
- voro++ (0.4.6+dfsg1-2)
- library for the computation of the Voronoi diagram
- voro++-examples (0.4.6+dfsg1-2)
- library for the computation of the Voronoi diagram (examples)
- voronota (1.18.1877-1)
- Voronoi diagram-based tool to find atom contacts
- votca-csg (1.4.1-1build1)
- VOTCA's coarse-graining engine
- votca-csg-scripts (1.4.1-1build1)
- VOTCA's coarse-graining scripts
- votca-csg-tutorials (1.4.1-1build1)
- VOTCA's coarse-graining tutorials
- vowpal-wabbit (8.5.0.dfsg1-1)
- fast and scalable online machine learning algorithm
- voxbo (1.8.5~svn1246-2ubuntu2)
- processing, statistical analysis, and display of brain imaging data
- vsearch (2.7.1-1)
- tool for processing metagenomic sequences
- wcslib-tools (5.18-1)
- Command line tools utilizing wcslib
- wcstools (3.9.5-2)
- Handle the WCS of a FITS image
- weightwatcher (1.12+dfsg-1)
- Combine maps and polygon data for astronomical image processing
- weka (3.6.14-1)
- Machine learning algorithms for data mining tasks
- wfrog (0.8.2+svn973-1)
- Web-based customizable weather station software
- wigeon (20101212+dfsg1-1build1)
- reimplementation of the Pintail 16S DNA anomaly detection utility
- wise (2.4.1-20)
- comparison of biopolymers, like DNA and protein sequences
- wsclean (2.5-1)
- Fast generic widefield interferometric imager
- wxastrocapture (1.8.1+git20140821+dfsg-2)
- Windows linuX Astronomy Capture
- xbs (0-10build1)
- 3-d models and movies of molecules
- xcas (1.2.3.57+dfsg1-2build3)
- Computer Algebra System - console and graphical calculator
- xcrysden (1.5.60-1build3)
- Crystalline and Molecular Structure Visualizer
- xcrysden-data (1.5.60-1build3)
- Crystalline and Molecular Structure Visualizer (Data Files)
- xflr5 (6.09.06-2build2)
- analysis tool for airfoils
- xfoil (6.99.dfsg-2build1)
- program for the design and analysis of subsonic airfoils
- xmakemol (5.16-9)
- program for visualizing atomic and molecular systems
- xmakemol-gl (5.16-9)
- program for visualizing atomic and molecular systems (OpenGL)
- xmds2 (2.2.3+dfsg-5)
- eXtensible Multi-Dimensional Simulator
- xpa-tools (2.1.18-4)
- Tools for seamless communication between Unix programs
- xplot (1.19-9build2)
- simple on-screen x-y column data plotter
- xplot-xplot.org (0.90.7.1-3)
- fast tool to graph and visualize lots of data
- xppaut (6.11b+1.dfsg-1build1)
- Phase Plane Plus Auto: Solves many kinds of equations
- xtide (2.13.2-1build1)
- provides tide and current predictions
- xtide-coastline (20020202-1)
- coastline data for xtide
- xtide-data (20100529-1)
- Harmonics data for xtide
- xyscan (4.30-1)
- data thief for scientists
- yade (2018.02b-1)
- Platform for discrete element modeling
- yagv (0.4~20130422.r5bd15ed+dfsg-4)
- yet another G-code viewer
- yorick-av (0.0.4-1)
- write movies from Yorick in various formats
- yorick-full (2.2.04+dfsg1-9)
- full installation of the Yorick interpreter and add-ons
- yorick-gy (0.0.5-1)
- GObject introspection and Gtk bindings for Yorick
- yorick-gyoto (1.2.0-4)
- General relativistic geodesic integration for the Yorick language
- yorick-mira (1.1.0+git20170124.3bd1c3~dfsg1-2)
- optical interferometry image reconstruction within Yorick
- yorick-mpeg (0.1-3)
- MPEG output support for the Yorick language
- yorick-mpy-common (2.2.04+dfsg1-9)
- Message Passing Yorick (common files)
- yorick-mpy-mpich2 (2.2.04+dfsg1-9)
- Message Passing Yorick (MPICH2 build)
- yorick-mpy-openmpi (2.2.04+dfsg1-9)
- Message Passing Yorick (OpenMPI build)
- yorick-svipc (0.16-2build4)
- interprocess communication (shared memory...) for Yorick
- yorick-ygsl (1.2.1-1build1)
- GSL special functions plugin for the Yorick language
- yorick-ynfft (1.0.3-1)
- nonequispaced fast Fourier transform for Yorick
- z3 (4.4.1-0.3build4)
- theorem prover from Microsoft Research
- z88 (13.0.0+dfsg2-5)
- Finite Element Analysis Program - runtime
- zalign (0.9.1-3)
- parallel local alignment of biological sequences
- zegrapher (3.0.2-1)
- plotting mathematical functions and sequences on the plane
- zimpl (3.3.4-2)
- mathematical modeling language for optimization problems
- ztex-bmp (20120314-2)
- universal macro processor