Paket: canu (1.6+dfsg-2)

Länkar för canu

Trisquelresurser:

Hämta källkodspaketet canu:

Ansvarig:

Debian Med Packaging Team (E-postarkiv)

Original Maintainers:

Debian Med Packaging Team (E-postarkiv)
Afif Elghraoui

Externa resurser:

Hemsida [canu.readthedocs.org]

Liknande paket:

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Andra paket besläktade med canu

beror

rekommenderar

föreslår

dep: libc6 (>= 2.14)

GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libfilesys-df-perl

Module to obtain filesystem disk space information
dep: libgcc1 (>= 1:3.0)

GCC support library
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: mhap (>= 2.1)

locality-sensitive hashing to detect long-read overlaps
dep: perl

Larry Wall's Practical Extraction and Report Language

rec: gnuplot

Command-line driven interactive plotting program.
också ett virtuellt paket som tillhandahålls av gnuplot-nox, gnuplot-qt, gnuplot-x11

sug: nanopolish

consensus caller for nanopore sequencing data
sug: pbgenomicconsensus

Pacific Biosciences variant and consensus caller

Hämta canu

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	1.846,7 kbyte	11664 kbyte	[filförteckning]

Sections