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[ Källkod: mira  ]

Paket: mira-assembler (4.9.6-3build2)

Länkar för mira-assembler

mira-assembler

Trisquelresurser:

Hämta källkodspaketet mira:

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Original Maintainers:

  • Debian Med Packaging Team (E-postarkiv)
  • Charles Plessy
  • Steffen Moeller
  • Tim Booth
  • Andreas Tille
  • Thorsten Alteholz
  • Michael R. Crusoe

Externa resurser:

Liknande paket:

Whole Genome Shotgun and EST Sequence Assembler

The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof.

The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments.

The package provides the following executables: Binaries provided: 

 * mira: for assembly of genome sequences
 * miramem: estimating memory needed to assemble projects.
 * mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
 * miraconvert: is a tool to convert, extract and sometimes recalculate all
   kinds of data related to sequence assembly files.

Andra paket besläktade med mira-assembler

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  • dep: libboost-regex1.65.1
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  • dep: libboost-system1.65.1
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  • dep: libboost-thread1.65.1
    portable C++ multi-threading
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libexpat1 (>= 2.0.1)
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  • dep: libgcc1 (>= 1:3.0) [amd64]
    GCC support library
    dep: libgcc1 (>= 1:4.2) [i386]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.2.6)
    compression library - runtime
  • sug: mira-doc
    documentation for the mira assembler

Hämta mira-assembler

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 2.173,7 kbyte6954 kbyte [filförteckning]
i386 2.146,3 kbyte7311 kbyte [filförteckning]