Skip to content
Sections
>> Trisquel >> Paket >> etiona >> science >> ncbi-epcr
[  etiona  ] [  nabia  ] [  aramo  ]
[ Källkod: epcr  ]

Paket: ncbi-epcr (2.3.12-1-5)

Länkar för ncbi-epcr

ncbi-epcr

Trisquelresurser:

Hämta källkodspaketet epcr:

Ansvarig:

Original Maintainers:

  • Debian Med Packaging Team (E-postarkiv)
  • Steffen Moeller
  • Andreas Tille
  • Charles Plessy

Externa resurser:

Liknande paket:

Tool to test a DNA sequence for the presence of sequence tagged sites

Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs.

The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontiguous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments.

The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database.

This program is retired upstream and it is suggested to use Primer-Blast 

 https://www.ncbi.nlm.nih.gov/tools/primer-blast/
instead.

Andra paket besläktade med ncbi-epcr

  • beror
  • rekommenderar
  • föreslår
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libgcc1 (>= 1:3.0) [amd64]
    GCC support library
    dep: libgcc1 (>= 1:4.2) [i386]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • sug: bioperl
    Perl tools for computational molecular biology

Hämta ncbi-epcr

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 112,8 kbyte423 kbyte [filförteckning]
i386 121,2 kbyte431 kbyte [filförteckning]