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Paket: prime-phylo (1.0.11-4build2)

bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Andra paket besläktade med prime-phylo

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    Multiple alignment program for amino acid or nucleotide sequences
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    Bayesian Inference of Phylogeny
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    Multiple alignment program of protein sequences
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    phylogenetic tree drawing program
  • sug: phyml
    Phylogenetic estimation using Maximum Likelihood
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    multiple sequence alignment using partition function posterior probabilities
  • sug: python-biopython
    Python library for bioinformatics (implemented in Python 2)
  • sug: raxml
    Randomized Axelerated Maximum Likelihood of phylogenetic trees
  • sug: treeviewx
    Displays and prints phylogenetic trees

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Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 832,3 kbyte3390 kbyte [filförteckning]
i386 902,1 kbyte3371 kbyte [filförteckning]