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[ Källkod: srst2  ]

Paket: srst2 (0.2.0-5)

Länkar för srst2

srst2

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Original Maintainers:

  • Debian Med Packaging Team (E-postarkiv)
  • Andreas Tille

Externa resurser:

Liknande paket:

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Andra paket besläktade med srst2

  • beror
  • rekommenderar
  • föreslår
  • dep: bowtie2
    ultrafast memory-efficient short read aligner
  • dep: cd-hit
    suite of programs designed to quickly group sequences
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-biopython
    Python library for bioinformatics (implemented in Python 2)
  • dep: python-scipy
    scientific tools for Python
  • dep: samtools
    processing sequence alignments in SAM and BAM formats
  • rec: python-rpy2
    Python 2 interface to the GNU R language and environment (version 2.8)

Hämta srst2

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 59,1 kbyte258 kbyte [filförteckning]