[ etiona ]
[ Källkod: tophat ]
Paket: tophat (2.1.1+dfsg1-1)
Länkar för tophat
Trisquelresurser:
Hämta källkodspaketet tophat:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Carlos Borroto
- Alexandre Mestiashvili
- Andreas Tille
Externa resurser:
- Hemsida [ccb.jhu.edu]
Liknande paket:
fast splice junction mapper for RNA-Seq reads
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.
Andra paket besläktade med tophat
|
|
|
-
- dep: libboost-system1.65.1
- Operating system (e.g. diagnostics support) library
-
- dep: libboost-thread1.65.1
- portable C++ multi-threading
-
- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libgcc1 (>= 1:3.0)
- GCC support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: python
- interactive high-level object-oriented language (default version)
-
- dep: samtools (>= 1.5)
- processing sequence alignments in SAM and BAM formats
-
- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
-
- sug: cufflinks
- Paketet inte tillgängligt
Hämta tophat
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 659,8 kbyte | 3807 kbyte | [filförteckning] |