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[ Källkod: samtools  ]

Paket: samtools (1.10-3)

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Andra paket besläktade med samtools

  • beror
  • rekommenderar
  • föreslår
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    också ett virtuellt paket som tillhandahålls av libc6-udeb
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libncurses6 (>= 6)
    shared libraries for terminal handling
  • dep: libtinfo6 (>= 6)
    shared low-level terminfo library for terminal handling
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: cwltool
    Common Workflow Language reference implementation
  • rec: python3
    interactive high-level object-oriented language (default python3 version)

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amd64 484,8 kbyte1146 kbyte [filförteckning]