Paket: bio-rainbow (2.0.4+dfsg-1)
Länkar för bio-rainbow
Trisquelresurser:
Hämta källkodspaketet bio-rainbow:
- [bio-rainbow_2.0.4+dfsg-1.dsc]
- [bio-rainbow_2.0.4+dfsg.orig.tar.xz]
- [bio-rainbow_2.0.4+dfsg-1.debian.tar.xz]
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Olivier Sallou
Externa resurser:
- Hemsida [sourceforge.net]
Liknande paket:
clustering and assembling short reads for bioinformatics
Efficient tool for clustering and assembling short reads, especially for RAD.
Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.
Andra paket besläktade med bio-rainbow
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.4) [armhf]
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
Hämta bio-rainbow
Arkitektur | Paketstorlek | Installerad storlek | Filer |
---|---|---|---|
amd64 | 50,7 kbyte | 161 kbyte | [filförteckning] |
armhf | 47,4 kbyte | 128 kbyte | [filförteckning] |