Skip to content
Sections
>> Trisquel >> Paket >> nabia >> science >> maffilter
[  nabia  ] [  aramo  ]
[ Källkod: maffilter  ]

Paket: maffilter (1.3.1+dfsg-1build1)

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores. 

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Andra paket besläktade med maffilter

  • beror
  • rekommenderar
  • föreslår
  • sug: maffilter-examples
    process genome alignment in the Multiple Alignment Format (example data)

Hämta maffilter

Hämtningar för alla tillgängliga arkitekturer
Arkitektur Paketstorlek Installerad storlek Filer
amd64 225,5 kbyte909 kbyte [filförteckning]
armhf 200,7 kbyte608 kbyte [filförteckning]