Paket: murasaki-mpi (1.68.6-9build2)
Länkar för murasaki-mpi
Trisquelresurser:
Hämta källkodspaketet murasaki:
Ansvarig:
Original Maintainers:
- Debian Med Packaging Team (E-postarkiv)
- Andreas Tille
Externa resurser:
- Hemsida [murasaki.dna.bio.keio.ac.jp]
Liknande paket:
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
Andra paket besläktade med murasaki-mpi
|
|
|
-
- dep: libboost-filesystem1.71.0
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-iostreams1.71.0
- Boost.Iostreams Library
-
- dep: libboost-regex1.71.0-icu66
- virtuellt paket som tillhandahålls av libboost-regex1.71.0
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libopenmpi3 (>= 4.0.3~rc4)
- high performance message passing library -- shared library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: murasaki-common
- homology detection tool across multiple large genomes (common files)
Hämta murasaki-mpi
Arkitektur | Paketstorlek | Installerad storlek | Filer |
---|---|---|---|
amd64 | 649,2 kbyte | 4207 kbyte | [filförteckning] |
armhf | 448,6 kbyte | 1924 kbyte | [filförteckning] |