Skip to content
Sections
>> Trisquel >> Paketler >> nabia >> gnu-r >> r-cran-spp
[  nabia  ] [  aramo  ]
[ Kaynak: r-cran-spp  ]

Paket: r-cran-spp (1.16.0-1build1)

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data 

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

r-cran-spp ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-3.5
    sanal paketi sağlayan r-base-core
  • dep: r-base-core (>= 3.6.2.20200221-1build1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-rsamtools
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-cran-bh (>= 1.66)
    (Virtual) GNU R package to provide BH
  • dep: r-cran-catools
    GNU R package providing various utility functions
  • dep: r-cran-rcpp
    GNU R package for Seamless R and C++ Integration
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

r-cran-spp indir

Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 317,5 kB462 kB [dosya listesi]
armhf 310,3 kB393 kB [dosya listesi]