Paket: idba (1.1.3-5build1)
idba için bağlantılar
Trisquel Kaynakları:
idba Kaynak Paketini İndir:
Geliştirici:
Original Maintainers:
- Debian Med Packaging Team (Posta Arşivi)
- Andreas Tille
Dış Kaynaklar:
- Ana Sayfa [github.com]
Benzer paketler:
iterative De Bruijn Graph short read assemblers
IDBA stands for iterative de Bruijn graph assembler. In computational sequence biology, an assembler solves the puzzle coming from large sequencing machines that feature many gigabytes of short reads from a large genome.
This package provides several flavours of the IDBA assembler, as they all share the same source tree but serve different purposes and evolved over time.
IDBA is the basic iterative de Bruijn graph assembler for second-generation sequencing reads. IDBA-UD, an extension of IDBA, is designed to utilize paired-end reads to assemble low-depth regions and use progressive depth on contigs to reduce errors in high-depth regions. It is a generic purpose assembler and especially good for single-cell and metagenomic sequencing data. IDBA-Hybrid is another update version of IDBA-UD, which can make use of a similar reference genome to improve assembly result. IDBA-Tran is an iterative de Bruijn graph assembler for RNA-Seq data.
idba ile İlgili Diğer Paketler
|
|
|
-
- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
idba indir
| Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
|---|---|---|---|
| amd64 | 393,9 kB | 2755 kB | [dosya listesi] |
| armhf | 357,7 kB | 1731 kB | [dosya listesi] |