Paket: kraken (1.1.1-1build1)
kraken için bağlantılar
Trisquel Kaynakları:
kraken Kaynak Paketini İndir:
Geliştirici:
Original Maintainers:
- Debian Med Packaging Team (Posta Arşivi)
- Andreas Tille
Dış Kaynaklar:
- Ana Sayfa [ccb.jhu.edu]
Benzer paketler:
assigning taxonomic labels to short DNA sequences
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.
In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.
kraken ile İlgili Diğer Paketler
|
|
|
-
- dep: jellyfish1
- count k-mers in DNA sequences
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
- dep: libc6 (>= 2.7) [armhf]
-
- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
-
- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
kraken indir
| Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
|---|---|---|---|
| amd64 | 733,3 kB | 1530 kB | [dosya listesi] |
| armhf | 726,5 kB | 1408 kB | [dosya listesi] |