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Paket: plasmidseeker (1.0+dfsg-1)

identification of known plasmids from whole-genome sequencing reads

PlasmidSeeker is a k-mer based program for the identification of known plasmids from bacterial whole genome sequencing reads.

PlasmidSeeker that enables the detection of plasmids from bacterial WGS data without read assembly. The PlasmidSeeker algorithm is based on k-mers and uses k-mer abundance to distinguish between plasmid and bacterial sequences. The performance of PlasmidSeeker was tested on a set of simulated and real bacterial WGS samples, resulting in 100% sensitivity and 99.98% specificity.

plasmidseeker ile İlgili Diğer Paketler

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  • dep: genometester (>= 4.0+git20180508.a9c14a6+dfsg)
    toolkit for performing set operations on k-mer lists

plasmidseeker indir

Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 23,9 kB90 kB [dosya listesi]
armhf 23,9 kB90 kB [dosya listesi]