Skip to content
Sections
>> Trisquel >> Paketler >> nabia >> science >> proteinortho
[  etiona  ] [  nabia  ] [  aramo  ]
[ Kaynak: proteinortho  ]

Paket: proteinortho (6.0.14+dfsg-1)

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

proteinortho ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • dep: diamond-aligner
    accelerated BLAST compatible local sequence aligner
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: liblapack3
    Library of linear algebra routines 3 - shared version
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: procps
    /proc file system utilities
  • dep: python3
    interactive high-level object-oriented language (default python3 version)

proteinortho indir

Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 202,6 kB790 kB [dosya listesi]