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[ Kaynak: samtools  ]

Paket: samtools (1.10-3)

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

samtools ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libncurses6 (>= 6)
    shared libraries for terminal handling
  • dep: libtinfo6 (>= 6)
    shared low-level terminfo library for terminal handling
  • dep: zlib1g (>= 1:1.1.4) [amd64]
    compression library - runtime
    dep: zlib1g (>= 1:1.2.3.3) [armhf]
  • rec: cwltool
    Common Workflow Language reference implementation
  • rec: python3
    interactive high-level object-oriented language (default python3 version)

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Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
amd64 484,8 kB1146 kB [dosya listesi]
armhf 457,1 kB911 kB [dosya listesi]