Skip to content
Sections
>> Trisquel >> Packages >> aramo >> science >> quicktree
aramo  ]
[ Source: quicktree  ]

Пакунок: quicktree (2.5-5)

Neighbor-Joining algorithm for phylogenies

QuickTree is an efficient implementation of the Neighbor-Joining algorithm (PMID: 3447015), capable of reconstructing phylogenies from huge alignments in time less than the age of the universe.

QuickTree accepts both distance matrix and multiple-sequence-aligment inputs. The former should be in PHYLIP format. The latter should be in Stockholm format, which is the native alignment format for the Pfam database. Alignments in various formats can be converted to Stockholm format with the sreformat program, which is part of the HMMer package (hmmer.org).

The tress are written to stdout, in the Newick/New-Hampshire format use by PHYLIP and many other programs

Інші пакунки пов'язані з quicktree

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • sug: hmmer
    profile hidden Markov models for protein sequence analysis
    or hmmer2
    profile hidden Markov models for protein sequence analysis

Завантажити quicktree

Завантаження для всіх доступних архітектур
Архітектура Розмір пакунка Розмір після встановлення Файли
arm64 19.3 kB56 kB [список файлів]