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[ Source: unifrac  ]

Пакунок: python3-unifrac (1.3-2build1)

high-performance phylogenetic diversity calculations

The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.

This package contains the Python3 module.

Інші пакунки пов'язані з python3-unifrac

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libssu0 (>= 1.4)
    high-performance phylogenetic diversity calculations (lib)
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.13)
    dep: python3 (>= 3.12~)
  • dep: python3-biom-format
    Biological Observation Matrix (BIOM) format (Python 3)
  • dep: python3-h5py (>= 3.3.0)
    general-purpose Python interface to hdf5
  • dep: python3-iow
    balanced parentheses tree structure
  • dep: python3-numpy (>= 1:1.25.0)
    Fast array facility to the Python language (Python 3)
  • dep: python3-numpy-abi9
    virtual package provided by python3-numpy
  • dep: python3-skbio (>= 0.5.8-3~)
    Python3 data structures, algorithms, educational resources for bioinformatic

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