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[ Source: htslib  ]

Пакунок: htslib-test (1.7-2)

Links for htslib-test

htslib-test

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Download Source Package htslib:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Charles Plessy
  • Andreas Tille

External Resources:

Similar packages:

Test data for HTSlib

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

This package contains test files and scripts for the HTSlib.

Інші пакунки пов'язані з htslib-test

  • depends
  • recommends
  • suggests
  • dep: libhts-private-dev
    private development files for the HTSlib (use with care)
  • dep: perl
    Larry Wall's Practical Extraction and Report Language

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