Пакунок: seer (1.1.4-1build1)
Links for seer
Trisquel Resources:
Download Source Package seer:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
genomic sequence element (kmer) enrichment analysis
Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.
Інші пакунки пов'язані з seer
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- dep: libarmadillo8
- streamlined C++ linear algebra library
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- or libblas.so.3
- virtual package provided by libatlas3-base, libblas3, libopenblas-base
-
- dep: libboost-program-options1.65.1
- program options library for C++
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libgzstream0
- provide functionality of zlib C-library in a C++ iostream
-
- dep: libhdf5-100
- Hierarchical Data Format 5 (HDF5) - runtime files - serial version
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- dep: libstdc++6 (>= 7)
- GNU Standard C++ Library v3
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- dep: libtext-csv-perl
- comma-separated values manipulator (using XS or PurePerl)
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- sug: fsm-lite
- frequency-based string mining (lite)
Завантажити seer
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| amd64 | 403.4 kB | 1747 kB | [список файлів] |
| i386 | 404.1 kB | 1726 kB | [список файлів] |