[ Source: ariba ]
Пакунок: ariba (2.14.4+ds-2build1)
Links for ariba
Trisquel Resources:
Download Source Package ariba:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Sascha Steinbiss
External Resources:
- Homepage [github.com]
Similar packages:
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
Інші пакунки пов'язані з ariba
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- dep: bowtie2 (>= 2.1.0)
- ultrafast memory-efficient short read aligner
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- dep: cd-hit
- suite of programs designed to quickly group sequences
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- dep: fastaq (>= 3.12.0)
- FASTA and FASTQ file manipulation tools
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libfml0 (>= 0.1-4~)
- library for assembling Illumina short reads in small regions
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- dep: libgcc1 (>= 1:3.0)
- GCC support library (dependency package)
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- dep: libminimap0
- library for approximate mapping of long biosequences
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: mummer
- Efficient sequence alignment of full genomes
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.9)
- dep: python3 (>= 3.8~)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-bs4
- error-tolerant HTML parser for Python 3
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- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- dep: python3-pymummer (>= 0.10.2)
- Python 3 interface to MUMmer
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- dep: python3-pysam (>= 0.9.1)
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Завантажити ariba
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| amd64 | 1,898.5 kB | 20454 kB | [список файлів] |