[ Source: python-pyfaidx ]
Package: python3-pyfaidx (0.8.1.3-2)
Links for python3-pyfaidx
Trisquel Resources:
Download Source Package python-pyfaidx:
- [python-pyfaidx_0.8.1.3-2.dsc]
- [python-pyfaidx_0.8.1.3.orig.tar.gz]
- [python-pyfaidx_0.8.1.3-2.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Étienne Mollier
External Resources:
- Homepage [github.com]
Similar packages:
efficient random access to fasta subsequences for Python 3
Samtools provides a function "faidx" (FAsta InDeX), which creates a small flat index file ".fai" allowing for fast random access to any subsequence in the indexed FASTA file, while loading a minimal amount of the file in to memory. This Python module implements pure Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index. The pyfaidx module is API compatible with the pygr seqdb module. A command-line script "faidx" is installed alongside the pyfaidx module, and facilitates complex manipulation of FASTA files without any programming knowledge.
This package provides the Python 3 modules to access fasta files.
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Download python3-pyfaidx
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 29.0 kB | 125 kB | [list of files] |