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[ 源代码: discosnp ]
软件包: discosnp (1:2.6.2-1)
discosnp 的相关链接
Trisquel 的资源:
下载源码包 discosnp:
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Olivier Sallou
- Andreas Tille
外部的资源:
- 主页 [colibread.inria.fr]
相似软件包:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
其他与 discosnp 有关的软件包
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- dep: gatb-core
- Genome Analysis Toolbox with de-Bruijn graph
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实: libc6-udeb
-
- dep: libgatbcore3 (>= 1.4.2)
- dynamic library of the Genome Analysis Toolbox
-
- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
-
- dep: libhdf5-103-1
- HDF5 C runtime files - serial version
-
- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime