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[ 源代码: mcaller  ]

软件包: mcaller (1.0.3+git20210624.b415090-1)

find methylation in nanopore reads

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 H-C-aller
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This program is designed to call m6A from nanopore data using the differences between measured and expected currents.

其他与 mcaller 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-biopython
    Python3 library for bioinformatics
  • dep: python3-h5py
    general-purpose Python interface to hdf5
  • dep: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: python3-scipy
    scientific tools for Python 3
  • dep: python3-seaborn
    statistical visualization library for Python3
  • dep: python3-sklearn
    Python modules for machine learning and data mining - Python 3
  • rec: nanopolish
    consensus caller for nanopore sequencing data
    或者 poretools
    toolkit for nanopore nucleotide sequencing data
  • sug: bwa
    Burrows-Wheeler Aligner
  • sug: graphmap
    软件包暂时不可用

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