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[ 源代码: sprai  ]

软件包: sprai (0.9.9.23+dfsg1-2)

single-pass sequencing read accuracy improver

Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

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  • dep: libc6 (>= 2.7)
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    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: time
    GNU time program for measuring CPU resource usage
  • sug: make
    utility for directing compilation
  • sug: pbalign
    软件包暂时不可用
  • sug: pbgenomicconsensus
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  • sug: pbh5tools
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硬件架构 软件包大小 安装后大小 文件
amd64 1,474.9 kB1710 kB [文件列表]