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[ 源代码: spoa  ]

软件包: spoa (4.0.7+ds-2)

SIMD partial order alignment tool

Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to generate consensus sequences (as described in 10.1093/bioinformatics/btg109). It supports three alignment modes: local (Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap).

其他与 spoa 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [除 armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libspoa7.0.0 (>= 4.0.5+ds) [amd64]
    SIMD partial order alignment library
    dep: libspoa7.0.0 (>= 4.0.7+ds) [除 amd64]
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

下载 spoa

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 36.5 kB82 kB [文件列表]
arm64 35.8 kB74 kB [文件列表]
armhf 33.8 kB61 kB [文件列表]
ppc64el 37.9 kB98 kB [文件列表]