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[ 源代码: r-other-hms-dbmi-spp  ]

软件包: r-other-hms-dbmi-spp (1.15-1)

GNU R ChIP-seq processing pipeline

R package for anlaysis of ChIP-seq and other functional sequencing data 

 * Assess overall DNA-binding signals in the data and select appropriate
   quality of tag alignment.
 * Discard or restrict positions with abnormally high number of tags.
 * Calculate genome-wide profiles of smoothed tag density and save them
   in WIG files for viewing in other browsers.
 * Calculate genome-wide profiles providing conservative statistical
   estimates of fold enrichment ratios along the genome. These can be
   exported for browser viewing, or thresholded to determine regions of
   significant enrichment/depletion.
 * Determine statistically significant point binding positions
 * Assess whether the set of point binding positions detected at a
   current sequencing depth meets saturation criteria, and if does not,
   estimate what sequencing depth would be required to do so.

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  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
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  • dep: libstdc++6 (>= 5.2)
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  • dep: r-api-3.4
    本虚包由这些包填实: r-base-core
  • dep: r-base-core (>= 3.4.3-1)
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  • dep: r-bioc-rsamtools
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  • dep: r-cran-catools
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  • dep: zlib1g (>= 1:1.1.4)
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amd64 161.8 kB286 kB [文件列表]