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[ 源代码: pbalign  ]

软件包: pbalign (0.3.0-1)

map Pacific Biosciences reads to reference DNA sequences

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

This package is part of the SMRTAnalysis suite.

其他与 pbalign 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: blasr (>= 5.3+0)
    mapping single-molecule sequencing reads
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-pbalign
    map Pacific Biosciences reads to reference DNA sequences (Python2)
  • dep: python-pkg-resources
    Package Discovery and Resource Access using pkg_resources
  • rec: hdf5-tools
    Hierarchical Data Format 5 (HDF5) - Runtime tools
  • rec: python-pbh5tools
    tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
  • sug: bowtie2
    ultrafast memory-efficient short read aligner
  • sug: gmap
    软件包暂时不可用
  • sug: pbalign-doc
    documentation for pbalign

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