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[ 源代码: proteinortho  ]

软件包: proteinortho (5.16+dfsg-1)

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

其他与 proteinortho 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: python
    interactive high-level object-oriented language (default version)

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硬件架构 软件包大小 安装后大小 文件
i386 141.8 kB279 kB [文件列表]