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[ 源代码: r-bioc-variantannotation  ]

软件包: r-bioc-variantannotation (1.24.2-1)

BioConductor annotation of genetic variants

This BioConductor package provides R functions to annotate variants, compute amino acid coding changess and to predict coding outcomes.

其他与 r-bioc-variantannotation 有关的软件包

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  • 推荐
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  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: r-api-3.4
    本虚包由这些包填实: r-base-core
  • dep: r-base-core (>= 3.4.3-1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-annotationdbi (>= 1.27.9)
    GNU R Annotation Database Interface for BioConductor
  • dep: r-bioc-biobase
    base functions for Bioconductor
  • dep: r-bioc-biocgenerics (>= 0.15.3)
    generic functions for Bioconductor
  • dep: r-bioc-biostrings (>= 2.33.5)
    GNU R string objects representing biological sequences
  • dep: r-bioc-bsgenome (>= 1.37.6)
    BioConductor infrastructure for Biostrings-based genome data packages
  • dep: r-bioc-genomeinfodb (>= 1.11.4)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicfeatures (>= 1.27.4)
    GNU R tools for making and manipulating transcript centric annotations
  • dep: r-bioc-genomicranges (>= 1.27.6)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.3.25)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-rsamtools (>= 1.23.10)
    GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  • dep: r-bioc-rtracklayer (>= 1.25.16)
    GNU R interface to genome browsers and their annotation tracks
  • dep: r-bioc-s4vectors (>= 0.13.13)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-summarizedexperiment (>= 1.5.3)
    BioConductor assay container
  • dep: r-bioc-xvector (>= 0.5.6)
    BioConductor representation and manpulation of external sequences
  • dep: r-cran-dbi
    GNU R package providing a generic database interface
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime

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