软件包: gubbins (2.3.1-1)
gubbins 的相关链接
Trisquel 的资源:
下载源码包 gubbins:
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Aidan Delaney
外部的资源:
- 主页 [sanger-pathogens.github.io]
相似软件包:
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
其他与 gubbins 有关的软件包
|
|
|
-
- dep: fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
-
- dep: libc6 (>= 2.4)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实: libc6-udeb
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-biopython
- Python library for bioinformatics (implemented in Python 3)
-
- dep: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
-
- dep: python3-nose
- test discovery and running for Python3 unittest
-
- dep: python3-reportlab
- ReportLab library to create PDF documents using Python3
-
- dep: raxml (>= 8)
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime