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[ 源代码: mafft  ]

软件包: mafft (7.310-1)

mafft 的相关链接

mafft

Trisquel 的资源:

下载源码包 mafft:

维护者:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Charles Plessy
  • Andreas Tille

外部的资源:

相似软件包:

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: 

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),
and five speed-oriented methods: 
 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

其他与 mafft 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: libc6 (>= 2.7)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • rec: blast2
    transitional dummy package to ncbi-blast+-legacy
  • rec: libwww-perl
    simple and consistent interface to the world-wide web
  • rec: lynx
    classic non-graphical (text-mode) web browser
  • rec: ruby
    Interpreter of object-oriented scripting language Ruby (default version)
  • enh: t-coffee
    Multiple Sequence Alignment

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硬件架构 软件包大小 安装后大小 文件
i386 825.8 kB9803 kB [文件列表]