软件包: metaphlan2 (2.7.5-1)

metaphlan2 的相关链接

Trisquel 的资源:

下载源码包 metaphlan2:

维护者:

Debian Med Packaging Team (Mail Archive)

Original Maintainers:

Debian Med Packaging Team (Mail Archive)
Andreas Tille

外部的资源:

主页 [bitbucket.org]

相似软件包:

Metagenomic Phylogenetic Analysis

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution. From version 2.0, MetaPhlAn is also able to identify specific strains (in the not-so-frequent cases in which the sample contains a previously sequenced strains) and to track strains across samples for all species.

MetaPhlAn 2.0 relies on ~1M unique clade-specific marker genes (the marker information file can be found at usr/share/metaphlan2/utils/markers_info.txt.bz2) identified from ~17,000 reference genomes (~13,500 bacterial and archaeal, ~3,500 viral, and ~110 eukaryotic), allowing:

 * unambiguous taxonomic assignments;
 * accurate estimation of organismal relative abundance;
 * species-level resolution for bacteria, archaea, eukaryotes and
   viruses;
 * strain identification and tracking
 * orders of magnitude speedups compared to existing methods.
 * metagenomic strain-level population genomics

其他与 metaphlan2 有关的软件包

依赖

推荐

建议

dep: bowtie2

ultrafast memory-efficient short read aligner
dep: metaphlan2-data

data package for Metagenomic Phylogenetic Analysis
dep: python

interactive high-level object-oriented language (default version)
dep: python-biom-format

Biological Observation Matrix (BIOM) format (Python 2)
dep: python-msgpack

Python implementation of MessagePack format
dep: python-pandas

data structures for "relational" or "labeled" data

下载 metaphlan2

下载可用于所有硬件架构的
硬件架构	软件包大小	安装后大小	文件
all	157.7 kB	712 kB	[文件列表]

Sections