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[ 源代码: python-biopython  ]

软件包: python-biopython (1.70+dfsg-4)

Python library for bioinformatics (implemented in Python 2)

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source code is made available under the Biopython License, which is extremely liberal and compatible with almost every license in the world. The project works along with the Open Bioinformatics Foundation, who generously provide web and CVS space for the project.

This package is targeting Python version 2.

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  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: python
    interactive high-level object-oriented language (default version)
    dep: python (<< 2.8)
    dep: python (>= 2.7)
  • dep: python-numpy (>= 1:1.13.1)
    Numerical Python adds a fast array facility to the Python language
  • dep: python-numpy-abi9
    本虚包由这些包填实: python-numpy
  • dep: python-reportlab
    ReportLab library to create PDF documents using Python
  • sug: bwa [amd64]
    Burrows-Wheeler Aligner
  • sug: clustalo
    General purpose multiple sequence alignment program for proteins
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: dialign
    Segment-based multiple sequence alignment
  • sug: dssp
    protein secondary structure assignment based on 3D structure
  • sug: emboss
    European molecular biology open software suite
  • sug: fasttree
    phylogenetic trees from alignments of nucleotide or protein sequences
  • sug: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • sug: muscle
    Multiple alignment program of protein sequences
  • sug: phylip
    package of programs for inferring phylogenies
  • sug: phyml
    Phylogenetic estimation using Maximum Likelihood
  • sug: prank
    Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
  • sug: probcons
    PROBabilistic CONSistency-based multiple sequence alignment
  • sug: python-matplotlib
    Python based plotting system in a style similar to Matlab
  • sug: python-mysqldb
    Python interface to MySQL
  • sug: python-pil
    Python Imaging Library (Pillow fork)
  • sug: python-psycopg2
    Python module for PostgreSQL
  • sug: python-rdflib (>= 4)
    Python library containing an RDF triple store and RDF parsers/serializers
  • sug: python-renderpm
    python low level render interface
  • sug: python-scipy
    scientific tools for Python
  • sug: python-tk
    Tkinter - Writing Tk applications with Python
  • sug: raxml
    Randomized Axelerated Maximum Likelihood of phylogenetic trees
  • sug: samtools
    processing sequence alignments in SAM and BAM formats
  • sug: t-coffee
    Multiple Sequence Alignment
  • sug: w3-dtd-mathml
    Mathematical Markup Language V2.0 DTD
  • sug: wise (>= 2.4.1-16)
    comparison of biopolymers, like DNA and protein sequences

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硬件架构 软件包大小 安装后大小 文件
amd64 1,179.5 kB8016 kB [文件列表]
i386 1,179.0 kB8011 kB [文件列表]