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[ 源代码: kissplice  ]

软件包: kissplice (2.4.0-p1-2)

Detection of various kinds of polymorphisms in RNA-seq data

KisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads.

其他与 kissplice 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    同时作为一个虚包由这些包填实: libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: zlib1g (>= 1:1.2.3.4)
    compression library - runtime

下载 kissplice

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 761.4 kB1345 kB [文件列表]