软件包: sortmerna (2.1-2)
sortmerna 的相关链接
Trisquel 的资源:
下载源码包 sortmerna:
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Tim Booth
- Andreas Tille
外部的资源:
- 主页 [bioinfo.lifl.fr]
相似软件包:
tool for filtering, mapping and OTU-picking NGS reads
SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1). SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.
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