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[ 源代码: surankco  ]

软件包: surankco (0.0.r5+dfsg-1)

Supervised Ranking of Contigs in de novo Assemblies

SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet.

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  • dep: libhtsjdk-java
    Java API for high-throughput sequencing data (HTS) formats
  • dep: r-base-core
    GNU R core of statistical computation and graphics system
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: r-cran-optparse
    GNU/R Command line option parser
  • dep: r-cran-randomforest
    GNU R package implementing the random forest classificator

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