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[ 源代码: prokka  ]

软件包: prokka (1.14.5+dfsg-2)

prokka 的相关链接

prokka

Trisquel 的资源:

下载源码包 prokka:

维护者:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Michael R. Crusoe
  • Andreas Tille

外部的资源:

  • 主页 [www.vicbioinformatics.com]

相似软件包:

rapid annotation of prokaryotic genomes

A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.

其他与 prokka 有关的软件包

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  • 建议
  • dep: aragorn
    tRNA and tmRNA detection in nucleotide sequences
  • dep: default-jre
    Standard Java or Java compatible Runtime
  • dep: hmmer
    profile hidden Markov models for protein sequence analysis
  • dep: infernal
    inference of RNA secondary structural alignments
  • dep: less
    pager program similar to more
  • dep: libbio-perl-perl
    BioPerl core perl modules
  • dep: libbio-searchio-hmmer-perl
    perl parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)
  • dep: libswiss-perl
    Perl API to the UniProt database
  • dep: libxml-simple-perl
    Perl module for reading and writing XML
  • dep: ncbi-blast+ (>= 2.8)
    next generation suite of BLAST sequence search tools
  • dep: ncbi-tools-bin
    NCBI libraries for biology applications (text-based utilities)
  • dep: parallel
    build and execute command lines from standard input in parallel
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: prodigal
    Microbial (bacterial and archaeal) gene finding program

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