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[ aramo ]
[ 源代码: maffilter ]
软件包: maffilter (1.3.1+dfsg-1build1)
maffilter 的相关链接
Trisquel 的资源:
下载源码包 maffilter:
- [maffilter_1.3.1+dfsg-1build1.dsc]
- [maffilter_1.3.1+dfsg.orig.tar.xz]
- [maffilter_1.3.1+dfsg-1build1.debian.tar.xz]
维护者:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Julien Dutheil
外部的资源:
- 主页 [jydu.github.io]
相似软件包:
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.
* It can process the alignment to remove low-quality / ambiguous / masked regions. * It can export data into a single or multiple alignment file in format such as Fasta or Clustal. * It can read annotation data in GFF or GTF format, and extract the corresponding alignment. * It can perform sliding windows calculations. * It can reconstruct phylogeny/genealogy along the genome alignment. * It can compute population genetics statistics, such as site frequency spectrum, number of fixed/polymorphic sites, etc.
其他与 maffilter 有关的软件包
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- dep: libboost-iostreams1.71.0
- Boost.Iostreams Library
-
- dep: libbpp-core4 (>= 2.4.1)
- Bio++ Core library
-
- dep: libbpp-phyl-omics3 (>= 2.4.1)
- Bio++ Phylogenetics library: genomics components
-
- dep: libbpp-phyl12 (>= 2.4.1)
- Bio++ Phylogenetic library
-
- dep: libbpp-seq-omics3 (>= 2.4.1)
- Bio++ Sequence library: genomics components
-
- dep: libbpp-seq12 (>= 2.4.1)
- Bio++ Sequence library
-
- dep: libc6 (>= 2.4)
- GNU C Library: Shared libraries
同时作为一个虚包由这些包填实: libc6-udeb
-
- dep: libgcc-s1 (>= 3.5)
- GCC support library
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
-
- sug: maffilter-examples
- process genome alignment in the Multiple Alignment Format (example data)