Skip to content
Sections
>> Trisquel >> 软件包 >> nabia >> science >> barrnap
etiona  ] [  nabia  ] [  aramo  ]
[ 源代码: barrnap  ]

软件包: barrnap (0.9+dfsg-1)

barrnap 的相关链接

barrnap

Trisquel 的资源:

下载源码包 barrnap:

维护者:

Original Maintainers:

外部的资源:

  • 主页 [www.vicbioinformatics.com]

相似软件包:

rapid ribosomal RNA prediction

Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).

It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.

其他与 barrnap 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: bedtools
    suite of utilities for comparing genomic features
  • dep: hmmer (>= 3.1)
    profile hidden Markov models for protein sequence analysis
  • dep: perl
    Larry Wall's Practical Extraction and Report Language

下载 barrnap

下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
all 199.2 kB1440 kB [文件列表]