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[ 源代码: changeo  ]

软件包: changeo (0.4.6-1)

changeo 的相关链接

changeo

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外部的资源:

  • 主页 [changeo.readthedocs.io]

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Repertoire clonal assignment toolkit (Python 3)

Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of Ig repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. Change-O is a suite of utilities to facilitate advanced analysis of Ig and TCR sequences following germline segment assignment. Change-O handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of clustering methods for assigning clonal groups to Ig sequences. Record sorting, grouping, and various database manipulation operations are also included.

This package installs the library for Python 3.

其他与 changeo 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-airr
    Data Representation Standard library for antibody and TCR sequences
  • dep: python3-biopython
    Python3 library for bioinformatics
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-pkg-resources
    Package Discovery and Resource Access using pkg_resources
  • dep: python3-presto
    toolkit for processing B and T cell sequences
  • dep: python3-scipy
    scientific tools for Python 3
  • dep: python3-yaml
    YAML parser and emitter for Python3
  • rec: python3-airr (>= 1.2.1)
    Data Representation Standard library for antibody and TCR sequences
  • rec: python3-biopython (>= 1.65)
    Python3 library for bioinformatics
  • rec: python3-numpy (>= 1.8)
    Fast array facility to the Python 3 language
  • rec: python3-pandas (>= 0.15)
    data structures for "relational" or "labeled" data
  • rec: python3-presto (>= 0.5.10)
    toolkit for processing B and T cell sequences
  • rec: python3-scipy (>= 0.14)
    scientific tools for Python 3
  • rec: python3-yaml (>= 3.12)
    YAML parser and emitter for Python3

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